Information for 7-GGGAMCTCTAGTG (Motif 4)

A C T G C T A G A C T G C T G A G T A C A T G C A C G T A G T C A C G T G T C A A C T G A C G T A C T G
Reverse Opposite:
A G T C G T C A G T A C C A G T C G T A A C T G C G T A A T C G A C T G A G C T G T A C A G T C A G T C
p-value:1e-11
log p-value:-2.620e+01
Information Content per bp:1.832
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif8.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets64.5 +/- 19.3bp
Average Position of motif in Background75.9 +/- 16.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GFY(?)/Promoter/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GGGAMCTCTAGTG
GGGAATTGTAGT-
 A C T G C T A G A C T G C T G A G T A C A T G C A C G T A G T C A C G T G T C A A C T G A C G T A C T G
C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T A C G T

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:2
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------GGGAMCTCTAGTG
GCMTBCTGGGAGTTGTAGTY
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T A G A C T G C T G A G T A C A T G C A C G T A G T C A C G T G T C A A C T G A C G T A C T G
C A T G T A G C G T A C A G C T A C G T T G A C A G C T C T A G A C T G C T A G C G T A T C A G G C A T A G C T A C T G C G A T C T G A A C T G A C G T A G T C

GFY-Staf(?,Zf)/Promoter/Homer

Match Rank:3
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------GGGAMCTCTAGTG
GCATTCTGGGAATTGTAGTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T A G A C T G C T G A G T A C A T G C A C G T A G T C A C G T G T C A A C T G A C G T A C T G
T C A G T A G C G T C A A G C T A C G T A G T C A G C T A C T G A C T G C T A G C G T A C T G A C G A T A G C T A C T G A C G T C T G A A C T G A C G T A G C T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GGGAMCTCTAGTG----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C T G C T A G A C T G C T G A G T A C A T G C A C G T A G T C A C G T G T C A A C T G A C G T A C T G A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GGGAMCTCTAGTG----
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C T G C T A G A C T G C T G A G T A C A T G C A C G T A G T C A C G T G T C A A C T G A C G T A C T G A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----GGGAMCTCTAGTG--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G A C T G C T G A G T A C A T G C A C G T A G T C A C G T G T C A A C T G A C G T A C T G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

NKX2-8/MA0673.1/Jaspar

Match Rank:7
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:GGGAMCTCTAGTG-
-----NTCAAGTGG
 A C T G C T A G A C T G C T G A G T A C A T G C A C G T A G T C A C G T G T C A A C T G A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.51
Offset:5
Orientation:forward strand
Alignment:GGGAMCTCTAGTG--
-----BTBRAGTGSN
 A C T G C T A G A C T G C T G A G T A C A T G C A C G T A G T C A C G T G T C A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GGGAMCTCTAGTG-----
-TGACCTTTCGTGACCTT
 A C T G C T A G A C T G C T G A G T A C A T G C A C G T A G T C A C G T G T C A A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A G C T C T A G C G T A T G A C G T A C A G C T A G C T A G C T T A G C C A T G A G C T A C T G T G C A G T A C T A G C A G C T G A C T

PB0139.1_Irf5_2/Jaspar

Match Rank:10
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:GGGAMCTCTAGTG---
-NNAATTCTCGNTNAN
 A C T G C T A G A C T G C T G A G T A C A T G C A C G T A G T C A C G T G T C A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A T C G T A C G C T G A C T G A G A C T G A C T T A G C A G C T A G T C C A T G C T A G G C A T G A T C C G T A T C G A