Information for 7-ATGCAAACTGCAG (Motif 9)

C G T A A C G T A C T G A G T C C G T A G T C A C G T A A G T C A C G T A C T G A T G C C G T A A C T G
Reverse Opposite:
A G T C A C G T A T C G G T A C C G T A C T A G A C G T A C G T A C G T A C T G A G T C G T C A A C G T
p-value:1e-10
log p-value:-2.459e+01
Information Content per bp:1.903
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.0 +/- 25.3bp
Average Position of motif in Background78.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--ATGCAAACTGCAG
TTATGCAAAT-----
 A C G T A C G T C G T A A C G T A C T G A G T C C G T A G T C A C G T A A G T C A C G T A C T G A T G C C G T A A C T G
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--ATGCAAACTGCAG
ATATGCAAAT-----
 A C G T A C G T C G T A A C G T A C T G A G T C C G T A G T C A C G T A A G T C A C G T A C T G A T G C C G T A A C T G
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ATGCAAACTGCAG
TTGTATGCAAATTAGA-
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G T C C G T A G T C A C G T A A G T C A C G T A C T G A T G C C G T A A C T G
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:4
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ATGCAAACTGCAG
TTGTATGCAAATTAGA-
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G T C C G T A G T C A C G T A A G T C A C G T A C T G A T G C C G T A A C T G
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ATGCAAACTGCAG
TTGTATGCAAATTAGA-
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G T C C G T A G T C A C G T A A G T C A C G T A C T G A T G C C G T A A C T G
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ATGCAAACTGCAG
ATATGCAAATNNN--
 A C G T A C G T C G T A A C G T A C T G A G T C C G T A G T C A C G T A A G T C A C G T A C T G A T G C C G T A A C T G
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ATGCAAACTGCAG
AATATGCAAATT----
 A C G T A C G T A C G T C G T A A C G T A C T G A G T C C G T A G T C A C G T A A G T C A C G T A C T G A T G C C G T A A C T G
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T A C G T A C G T A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ATGCAAACTGCAG
ATGCATAATTCA-
 C G T A A C G T A C T G A G T C C G T A G T C A C G T A A G T C A C G T A C T G A T G C C G T A A C T G
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ATGCAAACTGCAG
TATGCAAAT-----
 A C G T C G T A A C G T A C T G A G T C C G T A G T C A C G T A A G T C A C G T A C T G A T G C C G T A A C T G
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ATGCAAACTGCAG
TATGCWAATBAV--
 A C G T C G T A A C G T A C T G A G T C C G T A G T C A C G T A A G T C A C G T A C T G A T G C C G T A A C T G
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T