Information for 4-GRKGGCASNA (Motif 2)

T A C G C T G A C A T G T C A G T C A G T A G C T C G A A T C G G T A C T G C A
Reverse Opposite:
A C G T C A T G T A G C A G C T A T C G A G T C A G T C G T A C G A C T A T G C
p-value:1e-60
log p-value:-1.399e+02
Information Content per bp:1.524
Number of Target Sequences with motif123.0
Percentage of Target Sequences with motif13.49%
Number of Background Sequences with motif949.2
Percentage of Background Sequences with motif1.99%
Average Position of motif in Targets51.5 +/- 30.7bp
Average Position of motif in Background48.6 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIC2/MA0738.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GRKGGCASNA
NGTGGGCAT--
 A C G T T A C G C T G A C A T G T C A G T C A G T A G C T C G A A T C G G T A C T G C A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GRKGGCASNA
GGTTGGCAT--
 A C G T T A C G C T G A C A T G T C A G T C A G T A G C T C G A A T C G G T A C T G C A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----GRKGGCASNA-
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T T A C G C T G A C A T G T C A G T C A G T A G C T C G A A T C G G T A C T G C A A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

THAP1/MA0597.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GRKGGCASNA
TNNGGGCAG--
 A C G T T A C G C T G A C A T G T C A G T C A G T A G C T C G A A T C G G T A C T G C A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GRKGGCASNA--
----TCAGTCTT
 T A C G C T G A C A T G T C A G T C A G T A G C T C G A A T C G G T A C T G C A A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GRKGGCASNA
ARNTGACA---
 A C G T T A C G C T G A C A T G T C A G T C A G T A G C T C G A A T C G G T A C T G C A
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GRKGGCASNA
GGGAGGACNG
 T A C G C T G A C A T G T C A G T C A G T A G C T C G A A T C G G T A C T G C A
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GRKGGCASNA
CTTGGCAA--
 T A C G C T G A C A T G T C A G T C A G T A G C T C G A A T C G G T A C T G C A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GRKGGCASNA
NNTTGGCANN-
 A C G T T A C G C T G A C A T G T C A G T C A G T A G C T C G A A T C G G T A C T G C A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GRKGGCASNA
-TTGACAGG-
 T A C G C T G A C A T G T C A G T C A G T A G C T C G A A T C G G T A C T G C A
A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T