Information for 14-TGCAATAAAC (Motif 31)

A C G T A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A G T C
Reverse Opposite:
C T A G A C G T A C G T A C G T C G T A A C G T A C G T A C T G A G T C C G T A
p-value:1e-6
log p-value:-1.547e+01
Information Content per bp:1.961
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif15.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets61.6 +/- 25.1bp
Average Position of motif in Background60.0 +/- 18.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX1/MA0878.1/Jaspar

Match Rank:1
Score:0.81
Offset:1
Orientation:forward strand
Alignment:TGCAATAAAC
-GCAATAAAA
 A C G T A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A G T C
A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-TGCAATAAAC
AAGCCATAAAA
 A C G T A C G T A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A G T C
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.77
Offset:1
Orientation:forward strand
Alignment:TGCAATAAAC-
-GTCATAAAAN
 A C G T A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C G T
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.77
Offset:0
Orientation:forward strand
Alignment:TGCAATAAAC-
GGTAATAAAAA
 A C G T A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

Hoxd9/MA0913.1/Jaspar

Match Rank:5
Score:0.76
Offset:1
Orientation:forward strand
Alignment:TGCAATAAAC-
-GCAATAAAAA
 A C G T A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C G T
A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

HOXA13/MA0650.1/Jaspar

Match Rank:6
Score:0.75
Offset:1
Orientation:forward strand
Alignment:TGCAATAAAC-
-CCAATAAAAA
 A C G T A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C G T
A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---TGCAATAAAC---
AAAGGTAATAAAATTT
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

HOXB13/MA0901.1/Jaspar

Match Rank:8
Score:0.73
Offset:1
Orientation:forward strand
Alignment:TGCAATAAAC-
-CCAATAAAAC
 A C G T A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C G T
A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

PH0063.1_Hoxb8/Jaspar

Match Rank:9
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---TGCAATAAAC---
ACCGGCAATTAATAAA
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C G T A C G T A C G T
G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--TGCAATAAAC-----
AATGCAATAAAATTTAT
 A C G T A C G T A C G T A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T