Information for 13-GGCCAATAGG (Motif 30)

A C T G A C T G G T A C A G T C C G T A G C T A G C A T C T G A C T A G C T A G
Reverse Opposite:
A G T C A G T C A G C T C G T A C G A T A C G T A C T G C A T G A G T C A G T C
p-value:1e-7
log p-value:-1.738e+01
Information Content per bp:1.849
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.49%
Number of Background Sequences with motif71.1
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets49.9 +/- 25.7bp
Average Position of motif in Background53.8 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GGCCAATAGG
AGCCAATCGG
 A C T G A C T G G T A C A G T C C G T A G C T A G C A T C T G A C T A G C T A G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GGCCAATAGG---
GAGGTCAAAAGGTCA
 A C G T A C G T A C T G A C T G G T A C A G T C C G T A G C T A G C A T C T G A C T A G C T A G A C G T A C G T A C G T
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GGCCAATAGG
ACTAGCCAATCA-
 A C G T A C G T A C G T A C T G A C T G G T A C A G T C C G T A G C T A G C A T C T G A C T A G C T A G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

NFYB/MA0502.1/Jaspar

Match Rank:4
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GGCCAATAGG
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G G T A C A G T C C G T A G C T A G C A T C T G A C T A G C T A G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GGCCAATAGG
TGCCAA----
 A C T G A C T G G T A C A G T C C G T A G C T A G C A T C T G A C T A G C T A G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

Rarg/MA0859.1/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GGCCAATAGG----
AAGGTCAAAAGGTCAA
 A C G T A C G T A C T G A C T G G T A C A G T C C G T A G C T A G C A T C T G A C T A G C T A G A C G T A C G T A C G T A C G T
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A

Rarb/MA0857.1/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GGCCAATAGG---
AAAGGTCAAAAGGTCA
 A C G T A C G T A C G T A C T G A C T G G T A C A G T C C G T A G C T A G C A T C T G A C T A G C T A G A C G T A C G T A C G T
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GGCCAATAGG
CGTGCCAAG---
 A C G T A C G T A C T G A C T G G T A C A G T C C G T A G C T A G C A T C T G A C T A G C T A G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

RARA/MA0729.1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GGCCAATAGG------
GAGGTCAAAAGGTCAATG
 A C G T A C G T A C T G A C T G G T A C A G T C C G T A G C T A G C A T C T G A C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G

CTCF/MA0139.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGCCAATAGG--------
TGGCCACCAGGGGGCGCTA
 A C G T A C T G A C T G G T A C A G T C C G T A G C T A G C A T C T G A C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A