Information for 2-TGAAVCACAAACC (Motif 2)

A C G T A T C G C G T A C G T A T G A C A G T C C G T A A G T C G T C A C G T A G T C A G T A C A G T C
Reverse Opposite:
C T A G A C T G A C G T A C G T A C G T A C T G A C G T A C T G A C T G A C G T A C G T A T G C G T C A
p-value:1e-15
log p-value:-3.523e+01
Information Content per bp:1.842
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif16.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets50.2 +/- 24.5bp
Average Position of motif in Background46.3 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TGAAVCACAAACC
-AAACCACANN--
 A C G T A T C G C G T A C G T A T G A C A G T C C G T A A G T C G T C A C G T A G T C A G T A C A G T C
A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T

RUNX3/MA0684.1/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TGAAVCACAAACC
-AAACCGCAAA--
 A C G T A T C G C G T A C G T A T G A C A G T C C G T A A G T C G T C A C G T A G T C A G T A C A G T C
A C G T G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TGAAVCACAAACC
-AAACCACAGAN-
 A C G T A T C G C G T A C G T A T G A C A G T C C G T A A G T C G T C A C G T A G T C A G T A C A G T C
A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TGAAVCACAAACC
NWAACCACADNN-
 A C G T A T C G C G T A C G T A T G A C A G T C C G T A A G T C G T C A C G T A G T C A G T A C A G T C
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGAAVCACAAACC
-AAACCACAGC--
 A C G T A T C G C G T A C G T A T G A C A G T C C G T A A G T C G T C A C G T A G T C A G T A C A G T C
A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGAAVCACAAACC
NAAACCACAG---
 A C G T A T C G C G T A C G T A T G A C A G T C C G T A A G T C G T C A C G T A G T C A G T A C A G T C
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T

RUNX2/MA0511.2/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TGAAVCACAAACC
-AAACCGCAA---
 A C G T A T C G C G T A C G T A T G A C A G T C C G T A A G T C G T C A C G T A G T C A G T A C A G T C
A C G T G C T A C T G A G T C A A G T C A G T C C T A G A G T C T G C A T C G A A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGAAVCACAAACC---
CGAAGCACACAAAATA
 A C G T A T C G C G T A C G T A T G A C A G T C C G T A A G T C G T C A C G T A G T C A G T A C A G T C A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

ZBTB7C/MA0695.1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TGAAVCACAAACC
GCGACCACCGAA-
 A C G T A T C G C G T A C G T A T G A C A G T C C G T A A G T C G T C A C G T A G T C A G T A C A G T C
C T A G T A G C C T A G G T C A G T A C A G T C G T C A G T A C G A T C T C A G G T C A T G C A A C G T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TGAAVCACAAACC
-GAAACTGAAACT
 A C G T A T C G C G T A C G T A T G A C A G T C C G T A A G T C G T C A C G T A G T C A G T A C A G T C
A C G T T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T