Information for 18-CCCTTGAGAA (Motif 24)

A G T C A G T C A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C A C G T A G T C C G T A C G T A A C T G A C T G A C T G
p-value:1e-6
log p-value:-1.406e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.5 +/- 10.5bp
Average Position of motif in Background63.6 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0111.1_Nkx2-2/Jaspar

Match Rank:1
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CCCTTGAGAA--
ATAACCACTTGAAAATT
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

EBF1/MA0154.3/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CCCTTGAGAA-
ANTCCCTNGGGAAT
 A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A A C G T
C T G A C A G T G A C T G T A C A G T C A G T C G C A T C G A T C T A G T C A G T A C G C T G A T G C A G A C T

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CCCTTGAGAA
NGTCCCNNGGGA-
 A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A
C T A G A T C G G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCCTTGAGAA--
--CSTGGGAAAD
 A G T C A G T C A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A A C G T A C G T
A C G T A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CCCTTGAGAA
TGACCTTGAN--
 A C G T A C G T A G T C A G T C A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCCTTGAGAA
TGACCTTGAV--
 A C G T A C G T A G T C A G T C A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCCTTGAGAA
CCACTTGAA--
 A C G T A G T C A G T C A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CCCTTGAGAA-
TCCCCTGGGGAC
 A C G T A G T C A G T C A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A A C G T
A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C

NKX2-3/MA0672.1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCCTTGAGAA
ACCACTTGAA--
 A C G T A C G T A G T C A G T C A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCCTTGAGAA
NSCACTYVAV--
 A C G T A C G T A G T C A G T C A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T