Information for 2-AAGCTATAAATGCCTT (Motif 4)

C G T A C G T A A C T G G A T C A C G T C G T A A G C T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T A C G T
Reverse Opposite:
C G T A C G T A A C T G A C T G A G T C G T C A A C G T C G A T A C G T C T G A C G A T C G T A C A T G A G T C C G A T A C G T
p-value:1e-9
log p-value:-2.222e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.87%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets71.5 +/- 14.4bp
Average Position of motif in Background26.5 +/- 18.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AAGCTATAAATGCCTT--
---GTATAAAAGGCGGGG
 C G T A C G T A A C T G G A T C A C G T C G T A A G C T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AAGCTATAAATGCCTT--
---GTATAAAAGGCGGGG
 C G T A C G T A A C T G G A T C A C G T C G T A A G C T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.59
Offset:5
Orientation:forward strand
Alignment:AAGCTATAAATGCCTT----
-----AGAAATGACTTCCCT
 C G T A C G T A A C T G G A T C A C G T C G T A A G C T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T A G T G C A C T G A T C G A A G C T C A T G T C G A A G T C G A C T A C G T A G T C G A T C G A T C G A C T

MEF2B/MA0660.1/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AAGCTATAAATGCCTT
--GCTATAAATAGC--
 C G T A C G T A A C T G G A T C A C G T C G T A A G C T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T A C G T
A C G T A C G T C T A G G T A C A G C T C G T A G C A T C G T A G C T A C G T A A C G T G C T A T C A G G T A C A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AAGCTATAAATGCCTT
AAGCCATAAAA-----
 C G T A C G T A A C T G G A T C A C G T C G T A A G C T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AAGCTATAAATGCCTT
-GNCTATAAAAGG---
 C G T A C G T A A C T G G A T C A C G T C G T A A G C T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T A C G T
A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AAGCTATAAATGCCTT
-GGCCATAAATCAC--
 C G T A C G T A A C T G G A T C A C G T C G T A A G C T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T A C G T
A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AAGCTATAAATGCCTT
--GCTAAAAATAGC--
 C G T A C G T A A C T G G A T C A C G T C G T A A G C T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T A C G T
A C G T A C G T A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AAGCTATAAATGCCTT
-NGYCATAAAWCH---
 C G T A C G T A A C T G G A T C A C G T C G T A A G C T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T

MEF2D/MA0773.1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AAGCTATAAATGCCTT
--ACTATAAATAGA--
 C G T A C G T A A C T G G A T C A C G T C G T A A G C T C G T A C G T A C G T A A C G T A C T G A G T C A G T C A C G T A C G T
A C G T A C G T C T G A G A T C G A C T G T C A C G A T G C T A C G T A G C T A A C G T C T G A T C A G G T C A A C G T A C G T