Information for 2-AACTCGCAGTAAG (Motif 2)

C G T A C G T A G T A C A C G T A G T C C T A G A G T C C G T A C T A G A G C T C T G A C T G A A C T G
Reverse Opposite:
A G T C A G C T A G C T C T G A A G T C A C G T A C T G A G T C A C T G C G T A A C T G A C G T A C G T
p-value:1e-10
log p-value:-2.499e+01
Information Content per bp:1.861
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.87%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.5 +/- 21.2bp
Average Position of motif in Background53.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Gfi1b/MA0483.1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AACTCGCAGTAAG
AAATCACAGCA--
 C G T A C G T A G T A C A C G T A G T C C T A G A G T C C G T A C T A G A G C T C T G A C T G A A C T G
T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AACTCGCAGTAAG---
-CCACACAGCAGGAGA
 C G T A C G T A G T A C A C G T A G T C C T A G A G T C C G T A C T A G A G C T C T G A C T G A A C T G A C G T A C G T A C G T
A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AACTCGCAGTAAG---
-CCACACAGCAGGAGA
 C G T A C G T A G T A C A C G T A G T C C T A G A G T C C G T A C T A G A G C T C T G A C T G A A C T G A C G T A C G T A C G T
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AACTCGCAGTAAG---
-GAGCACAGCAGGACA
 C G T A C G T A G T A C A C G T A G T C C T A G A G T C C G T A C T A G A G C T C T G A C T G A A C T G A C G T A C G T A C G T
A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AACTCGCAGTAAG
---DCTCAGCAGG
 C G T A C G T A G T A C A C G T A G T C C T A G A G T C C G T A C T A G A G C T C T G A C T G A A C T G
A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

Gfi1/MA0038.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AACTCGCAGTAAG
CAAATCACTG----
 A C G T C G T A C G T A G T A C A C G T A G T C C T A G A G T C C G T A C T A G A G C T C T G A C T G A A C T G
A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G A C G T A C G T A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AACTCGCAGTAAG
CCAACTGCCA-----
 A C G T A C G T C G T A C G T A G T A C A C G T A G T C C T A G A G T C C G T A C T A G A G C T C T G A C T G A A C T G
A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A A C G T A C G T A C G T A C G T A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AACTCGCAGTAAG
AAATCACTGC---
 C G T A C G T A G T A C A C G T A G T C C T A G A G T C C G T A C T A G A G C T C T G A C T G A A C T G
T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AACTCGCAGTAAG---
----CACAGCAGGGGG
 C G T A C G T A G T A C A C G T A G T C C T A G A G T C C G T A C T A G A G C T C T G A C T G A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0140.1_Irf6_2/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AACTCGCAGTAAG
ACCACTCTCGGTCAC
 A C G T A C G T C G T A C G T A G T A C A C G T A G T C C T A G A G T C C G T A C T A G A G C T C T G A C T G A A C T G
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C