Information for 2-ACATTAATTA (Motif 9)

C T G A G T A C C G T A C G A T G A C T C G T A G T C A A C G T G A C T T C G A
Reverse Opposite:
A G C T C T G A C G T A C A G T G C A T C T G A C G T A A C G T A C T G A G C T
p-value:1e-8
log p-value:-1.899e+01
Information Content per bp:1.826
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif8.61%
Number of Background Sequences with motif893.3
Percentage of Background Sequences with motif1.81%
Average Position of motif in Targets38.3 +/- 24.9bp
Average Position of motif in Background49.0 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0135.1_Phox2a/Jaspar

Match Rank:1
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--ACATTAATTA----
CAGCATTAATTAGTAG
 A C G T A C G T C T G A G T A C C G T A C G A T G A C T C G T A G T C A A C G T G A C T T C G A A C G T A C G T A C G T A C G T
A G T C T C G A A C T G G T A C T C G A G A C T A G C T C G T A C T G A C G A T A C G T C T G A C T A G A G C T T C A G T A C G

PH0062.1_Hoxb7/Jaspar

Match Rank:2
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--ACATTAATTA----
TNNCATTAATTANTNC
 A C G T A C G T C T G A G T A C C G T A C G A T G A C T C G T A G T C A A C G T G A C T T C G A A C G T A C G T A C G T A C G T
A G C T C G A T T A C G G T A C T G C A A C G T G A C T G T C A G C T A C G A T C A G T C T G A T G A C A C G T T C G A T A G C

PH0011.1_Alx1_2/Jaspar

Match Rank:3
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-ACATTAATTA------
CGCATTAATTAATTGGC
 A C G T C T G A G T A C C G T A C G A T G A C T C G T A G T C A A C G T G A C T T C G A A C G T A C G T A C G T A C G T A C G T A C G T
A G T C T C A G G T A C C T G A G A C T G A C T C T G A C G T A G A C T A G C T C T G A C T G A A G C T A G C T C T A G C T A G T G A C

Lhx3/MA0135.1/Jaspar

Match Rank:4
Score:0.81
Offset:0
Orientation:forward strand
Alignment:ACATTAATTA---
AAATTAATTAATC
 C T G A G T A C C G T A C G A T G A C T C G T A G T C A A C G T G A C T T C G A A C G T A C G T A C G T
C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C

Arid3b/MA0601.1/Jaspar

Match Rank:5
Score:0.80
Offset:0
Orientation:forward strand
Alignment:ACATTAATTA-
ATATTAATTAA
 C T G A G T A C C G T A C G A T G A C T C G T A G T C A A C G T G A C T T C G A A C G T
C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

PH0072.1_Hoxc8/Jaspar

Match Rank:6
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:ACATTAATTA------
ACNNTAATTACNNCAN
 C T G A G T A C C G T A C G A T G A C T C G T A G T C A A C G T G A C T T C G A A C G T A C G T A C G T A C G T A C G T A C G T
T G C A G T A C C T A G C A G T G A C T G T C A G C T A C A G T C A G T C T G A G T A C A G T C G A T C G T A C C G T A T G C A

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:7
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--ACATTAATTA-----
GAAAATTAATTACTTCG
 A C G T A C G T C T G A G T A C C G T A C G A T G A C T C G T A G T C A A C G T G A C T T C G A A C G T A C G T A C G T A C G T A C G T
C T A G T G C A G C T A C G T A C G T A C G A T A G C T C G T A C G T A C G A T A C G T C T G A G T A C G A C T A G C T A G T C A T C G

mix-a/MA0621.1/Jaspar

Match Rank:8
Score:0.79
Offset:1
Orientation:forward strand
Alignment:ACATTAATTA--
-AATTAATTAGT
 C T G A G T A C C G T A C G A T G A C T C G T A G T C A A C G T G A C T T C G A A C G T A C G T
A C G T C G T A C T G A G A C T A C G T C G T A C G T A A C G T A C G T C G T A C T A G A C G T

PH0019.1_Dbx2/Jaspar

Match Rank:9
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--ACATTAATTA----
TTTAATTAATTAATTC
 A C G T A C G T C T G A G T A C C G T A C G A T G A C T C G T A G T C A A C G T G A C T T C G A A C G T A C G T A C G T A C G T
A C G T C A G T G A C T G T C A C G T A G C A T G A C T C G T A C G T A C G A T C A G T C T G A C G T A A C G T G C A T G T A C

PH0120.1_Nkx6-3/Jaspar

Match Rank:10
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--ACATTAATTA-----
GAAAATTAATTACTTTG
 A C G T A C G T C T G A G T A C C G T A C G A T G A C T C G T A G T C A A C G T G A C T T C G A A C G T A C G T A C G T A C G T A C G T
C T A G T G C A G C A T C G T A G C T A C G A T G A C T C G T A C G T A C G A T A C G T C T G A T G A C A G C T A C G T A G C T A C T G