Information for 3-AAAAAGGTCA (Motif 8)

C G T A T G C A C T G A C T G A C G T A C A T G A T C G C A G T A G T C C G T A
Reverse Opposite:
C G A T A C T G G T C A A T G C G T A C C G A T G A C T G A C T A C G T A C G T
p-value:1e-8
log p-value:-2.007e+01
Information Content per bp:1.830
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif5.02%
Number of Background Sequences with motif321.1
Percentage of Background Sequences with motif0.65%
Average Position of motif in Targets43.3 +/- 30.7bp
Average Position of motif in Background52.2 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.84
Offset:0
Orientation:forward strand
Alignment:AAAAAGGTCA
ATCAAGGTCA
 C G T A T G C A C T G A C T G A C G T A C A T G A T C G C A G T A G T C C G T A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

PB0049.1_Nr2f2_1/Jaspar

Match Rank:2
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--AAAAAGGTCA----
TCTCAAAGGTCACGAG
 A C G T A C G T C G T A T G C A C T G A C T G A C G T A C A T G A T C G C A G T A G T C C G T A A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:3
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--AAAAAGGTCA
ANGNAAAGGTCA
 A C G T A C G T C G T A T G C A C T G A C T G A C G T A C A T G A T C G C A G T A G T C C G T A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--AAAAAGGTCA----
TCTCAAAGGTCACCTG
 A C G T A C G T C G T A T G C A C T G A C T G A C G T A C A T G A T C G C A G T A G T C C G T A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.80
Offset:3
Orientation:forward strand
Alignment:AAAAAGGTCA-
---AAGGTCAC
 C G T A T G C A C T G A C T G A C G T A C A T G A T C G C A G T A G T C C G T A A C G T
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

NR2F1/MA0017.2/Jaspar

Match Rank:6
Score:0.79
Offset:1
Orientation:forward strand
Alignment:AAAAAGGTCA----
-CAAAGGTCAAGGG
 C G T A T G C A C T G A C T G A C G T A C A T G A T C G C A G T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.79
Offset:0
Orientation:forward strand
Alignment:AAAAAGGTCA
AAYTAGGTCA
 C G T A T G C A C T G A C T G A C G T A C A T G A T C G C A G T A G T C C G T A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.78
Offset:2
Orientation:forward strand
Alignment:AAAAAGGTCA
--TRAGGTCA
 C G T A T G C A C T G A C T G A C G T A C A T G A T C G C A G T A G T C C G T A
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.77
Offset:1
Orientation:forward strand
Alignment:AAAAAGGTCA-
-CAAAGGTCAG
 C G T A T G C A C T G A C T G A C G T A C A T G A T C G C A G T A G T C C G T A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.77
Offset:2
Orientation:forward strand
Alignment:AAAAAGGTCA
--AGRGGTCA
 C G T A T G C A C T G A C T G A C G T A C A T G A T C G C A G T A G T C C G T A
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A