Information for 2-AGCCATAAATCAB (Motif 5)

C G T A T C A G A G T C G T A C C G T A A G C T C G T A C G T A G T C A G C A T A G T C C G T A A T C G
Reverse Opposite:
T A G C C G A T A C T G C G T A A C G T C G A T G C A T C T G A A C G T C A T G A C T G A G T C C G A T
p-value:1e-10
log p-value:-2.381e+01
Information Content per bp:1.720
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif18.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets60.8 +/- 25.9bp
Average Position of motif in Background52.5 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.87
Offset:1
Orientation:forward strand
Alignment:AGCCATAAATCAB
-GCCATAAATCA-
 C G T A T C A G A G T C G T A C C G T A A G C T C G T A C G T A G T C A G C A T A G T C C G T A A T C G
A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.86
Offset:0
Orientation:forward strand
Alignment:AGCCATAAATCAB
GGCCATAAATCA-
 C G T A T C A G A G T C G T A C C G T A A G C T C G T A C G T A G T C A G C A T A G T C C G T A A T C G
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:3
Score:0.86
Offset:0
Orientation:forward strand
Alignment:AGCCATAAATCAB
GGCCATAAATCAC
 C G T A T C A G A G T C G T A C C G T A A G C T C G T A C G T A G T C A G C A T A G T C C G T A A T C G
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.85
Offset:0
Orientation:forward strand
Alignment:AGCCATAAATCAB
GGCCATAAATCA-
 C G T A T C A G A G T C G T A C C G T A A G C T C G T A C G T A G T C A G C A T A G T C C G T A A T C G
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:5
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:AGCCATAAATCAB
RGCCATYAATCA-
 C G T A T C A G A G T C G T A C C G T A A G C T C G T A C G T A G T C A G C A T A G T C C G T A A T C G
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.80
Offset:2
Orientation:forward strand
Alignment:AGCCATAAATCAB
--TCATCAATCA-
 C G T A T C A G A G T C G T A C C G T A A G C T C G T A C G T A G T C A G C A T A G T C C G T A A T C G
A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AGCCATAAATCAB
-GYCATCMATCAT
 C G T A T C A G A G T C G T A C C G T A A G C T C G T A C G T A G T C A G C A T A G T C C G T A A T C G
A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Hmx1/MA0896.1/Jaspar

Match Rank:8
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---AGCCATAAATCAB-
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T C G T A T C A G A G T C G T A C C G T A A G C T C G T A C G T A G T C A G C A T A G T C C G T A A T C G A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:9
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---AGCCATAAATCAB-
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T C G T A T C A G A G T C G T A C C G T A A G C T C G T A C G T A G T C A G C A T A G T C C G T A A T C G A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AGCCATAAATCAB
NGYCATAAAWCH-
 C G T A T C A G A G T C G T A C C G T A A G C T C G T A C G T A G T C A G C A T A G T C C G T A A T C G
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T