Information for 2-CCTTMAAGGCCCACAM (Motif 4)

A G T C A G T C A C G T A C G T G T C A C G T A C G T A C T A G A C T G G T A C G A T C A G T C G T C A G A T C C G T A G T C A
Reverse Opposite:
C A G T C G A T C A T G C A G T A C T G C A T G A C T G G T A C G A T C A C G T A C G T A C G T G T C A C G T A A C T G C T A G
p-value:1e-10
log p-value:-2.486e+01
Information Content per bp:1.746
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.31%
Number of Background Sequences with motif9.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets74.1 +/- 13.9bp
Average Position of motif in Background55.8 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CCTTMAAGGCCCACAM----
----CGAAGCACACAAAATA
 A G T C A G T C A C G T A C G T G T C A C G T A C G T A C T A G A C T G G T A C G A T C A G T C G T C A G A T C C G T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

GFY(?)/Promoter/Homer

Match Rank:2
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCTTMAAGGCCCACAM
ACTACAATTCCC----
 A G T C A G T C A C G T A C G T G T C A C G T A C G T A C T A G A C T G G T A C G A T C A G T C G T C A G A T C C G T A G T C A
T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C A C G T A C G T A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:3
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CCTTMAAGGCCCACAM
TGWCCTCARNTGACC----
 A C G T A C G T A C G T A G T C A G T C A C G T A C G T G T C A C G T A C G T A C T A G A C T G G T A C G A T C A G T C G T C A G A T C C G T A G T C A
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C A C G T A C G T A C G T A C G T

Bcl6/MA0463.1/Jaspar

Match Rank:4
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CCTTMAAGGCCCACAM
TTTCCTAGAAAGCA-----
 A C G T A C G T A C G T A G T C A G T C A C G T A C G T G T C A C G T A C G T A C T A G A C T G G T A C G A T C A G T C G T C A G A T C C G T A G T C A
C A G T C G A T A G C T G T A C A G T C A C G T T C G A C T A G C T G A T C G A C T G A C A T G G T A C G C T A A C G T A C G T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:5
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CCTTMAAGGCCCACAM----
----AGCGGCACACACGCAA
 A G T C A G T C A C G T A C G T G T C A C G T A C G T A C T A G A C T G G T A C G A T C A G T C G T C A G A T C C G T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CCTTMAAGGCCCACAM--
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A G T C A G T C A C G T A C G T G T C A C G T A C G T A C T A G A C T G G T A C G A T C A G T C G T C A G A T C C G T A G T C A A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:7
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CCTTMAAGGCCCACAM---
RACTACAACTCCCAGVAKGC
 A C G T A G T C A G T C A C G T A C G T G T C A C G T A C G T A C T A G A C T G G T A C G A T C A G T C G T C A G A T C C G T A G T C A A C G T A C G T A C G T
T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C

TATA-Box(TBP)/Promoter/Homer

Match Rank:8
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CCTTMAAGGCCCACAM
GNCTATAAAAGG------
 A C G T A C G T A G T C A G T C A C G T A C G T G T C A C G T A C G T A C T A G A C T G G T A C G A T C A G T C G T C A G A T C C G T A G T C A
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CCTTMAAGGCCCACAM--
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A G T C A G T C A C G T A C G T G T C A C G T A C G T A C T A G A C T G G T A C G A T C A G T C G T C A G A T C C G T A G T C A A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

GFY-Staf(?,Zf)/Promoter/Homer

Match Rank:10
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-CCTTMAAGGCCCACAM---
AACTACAATTCCCAGAATGC
 A C G T A G T C A G T C A C G T A C G T G T C A C G T A C G T A C T A G A C T G G T A C G A T C A G T C G T C A G A T C C G T A G T C A A C G T A C G T A C G T
T C G A C G T A A G T C A G C T C G T A A G T C T C G A G C T A G A C T C G A T A G T C A G T C A G T C C T G A T C A G T G C A T C G A C A G T A T C G A G T C