Information for 9-ATTAATTCTCTCHTCA (Motif 13)

C G T A A C G T A C G T G C T A C G T A A C G T A C G T G T A C A G C T A G T C A C G T A T G C G A C T A C G T A T G C C G T A
Reverse Opposite:
A C G T A T C G G T C A C G T A T A C G C G T A C T A G C T G A A C T G C G T A C G T A C G A T C G A T C G T A C G T A C G A T
p-value:1e-9
log p-value:-2.158e+01
Information Content per bp:1.806
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.8 +/- 17.4bp
Average Position of motif in Background61.4 +/- 5.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0119.1_Nkx6-1_2/Jaspar

Match Rank:1
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----ATTAATTCTCTCHTCA
AGTAATTAATTACTTC----
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T G C T A C G T A A C G T A C G T G T A C A G C T A G T C A C G T A T G C G A C T A C G T A T G C C G T A
T C G A T C A G G A C T G C T A C G T A C G A T A G C T C G T A C G T A C G A T A C G T C T G A A G T C A C G T G A C T A G T C A C G T A C G T A C G T A C G T

PH0020.1_Dlx1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ATTAATTCTCTCHTCA
ATTAATTANCTCAN--
 C G T A A C G T A C G T G C T A C G T A A C G T A C G T G T A C A G C T A G T C A C G T A T G C G A C T A C G T A T G C C G T A
T C G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A G A T C G A T C A C G T A G T C C T G A T A C G A C G T A C G T

PB0031.1_Hoxa3_1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:ATTAATTCTCTCHTCA
GTTAATTANCTCNN--
 C G T A A C G T A C G T G C T A C G T A A C G T A C G T G T A C A G C T A G T C A C G T A T G C G A C T A C G T A T G C C G T A
T C A G A G C T A G C T G T C A C G T A A C G T A C G T C T G A T A G C G A T C C G A T T A G C T G A C G C T A A C G T A C G T

Lhx3/MA0135.1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ATTAATTCTCTCHTCA
AAATTAATTAATC-----
 A C G T A C G T C G T A A C G T A C G T G C T A C G T A A C G T A C G T G T A C A G C T A G T C A C G T A T G C G A C T A C G T A T G C C G T A
C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C A C G T A C G T A C G T A C G T A C G T

MNX1/MA0707.1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:ATTAATTCTCTCHTCA
TTTAATTANN------
 C G T A A C G T A C G T G C T A C G T A A C G T A C G T G T A C A G C T A G T C A C G T A T G C G A C T A C G T A T G C C G T A
C A G T G C A T A C G T G C T A C T G A A C G T C A G T T C G A A T G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

PH0142.1_Pou1f1/Jaspar

Match Rank:6
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----ATTAATTCTCTCHTCA
GATTAATTAATTAAGTC----
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T G C T A C G T A A C G T A C G T G T A C A G C T A G T C A C G T A T G C G A C T A C G T A T G C C G T A
C T A G T C G A C G A T C A G T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G C T A C G T A C A T G C G A T A G T C A C G T A C G T A C G T A C G T

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ATTAATTCTCTCHTCA
GAAAATTAATTACTTCG---
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T G C T A C G T A A C G T A C G T G T A C A G C T A G T C A C G T A T G C G A C T A C G T A T G C C G T A
C T A G T G C A G C T A C G T A C G T A C G A T A G C T C G T A C G T A C G A T A C G T C T G A G T A C G A C T A G C T A G T C A T C G A C G T A C G T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--ATTAATTCTCTCHTCA
ATATTAATTAA-------
 A C G T A C G T C G T A A C G T A C G T G C T A C G T A A C G T A C G T G T A C A G C T A G T C A C G T A T G C G A C T A C G T A T G C C G T A
C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

LMX1B/MA0703.1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ATTAATTCTCTCHTCA
-TTAATTAN-------
 C G T A A C G T A C G T G C T A C G T A A C G T A C G T G T A C A G C T A G T C A C G T A T G C G A C T A C G T A T G C C G T A
A C G T A G C T C G A T G C T A G C T A C G A T G C A T C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0149.1_Pou3f4/Jaspar

Match Rank:10
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----ATTAATTCTCTCHTCA
AATTAATTAATTAATTC----
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T G C T A C G T A A C G T A C G T G T A C A G C T A G T C A C G T A T G C G A C T A C G T A T G C C G T A
C T G A T G C A G C A T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G C T A C T G A C A G T C G A T A G T C A C G T A C G T A C G T A C G T