Information for 5-CGTCTCCATT (Motif 8)

A T G C C T A G C G A T A G T C A C G T T A G C G T A C G T C A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A C T G A C T G C G T A C T A G C G T A A G T C A T C G
p-value:1e-12
log p-value:-2.841e+01
Information Content per bp:1.830
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif14.7
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets41.9 +/- 25.0bp
Average Position of motif in Background44.1 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0033.1_Irf3_1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CGTCTCCATT---
CAGTTTCGNTTCTN
 A C G T A T G C C T A G C G A T A G T C A C G T T A G C G T A C G T C A A C G T A C G T A C G T A C G T A C G T
A G T C C T G A A T C G C A G T C G A T A C G T A G T C A T C G C A T G C G A T G C A T G A T C G A C T T A G C

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CGTCTCCATT---
NTNNCGTATCCAAGTNN
 A C G T A C G T A C G T A C G T A T G C C T A G C G A T A G T C A C G T T A G C G T A C G T C A A C G T A C G T A C G T A C G T A C G T
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGTCTCCATT
ATTTTCCATT
 A T G C C T A G C G A T A G T C A C G T T A G C G T A C G T C A A C G T A C G T
C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CGTCTCCATT
VBSYGTCTGG---
 A C G T A C G T A C G T A T G C C T A G C G A T A G T C A C G T T A G C G T A C G T C A A C G T A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CGTCTCCATT
CTGTCTGG---
 A C G T A T G C C T A G C G A T A G T C A C G T T A G C G T A C G T C A A C G T A C G T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CGTCTCCATT-------
TGTTCCCATTGTGTACT
 A T G C C T A G C G A T A G T C A C G T T A G C G T A C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CGTCTCCATT--
AGTTTCAKTTTC
 A T G C C T A G C G A T A G T C A C G T T A G C G T A C G T C A A C G T A C G T A C G T A C G T
C T G A T A C G G C A T A G C T A G C T A G T C T C G A A C T G C A G T A G C T A G C T G A T C

PB0037.1_Isgf3g_1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CGTCTCCATT---
TNAGTTTCGATTTTN
 A C G T A C G T A T G C C T A G C G A T A G T C A C G T T A G C G T A C G T C A A C G T A C G T A C G T A C G T A C G T
C A G T G C A T C T G A A T C G C G A T G C A T A C G T A G T C C T A G C G T A C G A T G C A T G A C T G A C T A C T G

YY2/MA0748.1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CGTCTCCATT-
GTCCGCCATTA
 A T G C C T A G C G A T A G T C A C G T T A G C G T A C G T C A A C G T A C G T A C G T
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CGTCTCCATT---
-GTTTCACTTCCG
 A T G C C T A G C G A T A G T C A C G T T A G C G T A C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A T C G G A C T A C G T A G C T A G T C G C T A A G T C G C A T A C G T A G T C G A T C A C T G