Information for 3-ACACAGAAAGAAG (Motif 3)

C T G A G T A C G C T A A G T C C G T A A C T G G T C A T G C A C G T A A C T G C T G A C T G A C T A G
Reverse Opposite:
A G T C G A C T A G C T G T A C A C G T A C G T A C G T T A G C A C G T A C T G C G A T A C T G A G C T
p-value:1e-14
log p-value:-3.231e+01
Information Content per bp:1.773
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif10.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets55.9 +/- 23.7bp
Average Position of motif in Background59.7 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ACACAGAAAGAAG-
AAACAGACAAAGGAAT
 A C G T A C G T C T G A G T A C G C T A A G T C C G T A A C T G G T C A T G C A C G T A A C T G C T G A C T G A C T A G A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ACACAGAAAGAAG---
WNAGTCADAVTGAAACTN
 A C G T A C G T C T G A G T A C G C T A A G T C C G T A A C T G G T C A T G C A C G T A A C T G C T G A C T G A C T A G A C G T A C G T A C G T
G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ACACAGAAAGAAG-
BAGTCATANTGAAAG
 A C G T C T G A G T A C G C T A A G T C C G T A A C T G G T C A T G C A C G T A A C T G C T G A C T G A C T A G A C G T
A C T G C G T A A T C G C G A T T G A C C G T A C G A T G C T A G T C A C G A T T C A G C T G A C T G A C T G A T A C G

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ACACAGAAAGAAG
CCACACAGCAGGAGA
 A C G T A C G T C T G A G T A C G C T A A G T C C G T A A C T G G T C A T G C A C G T A A C T G C T G A C T G A C T A G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--ACACAGAAAGAAG
GAGCACAGCAGGACA
 A C G T A C G T C T G A G T A C G C T A A G T C C G T A A C T G G T C A T G C A C G T A A C T G C T G A C T G A C T A G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:ACACAGAAAGAAG
-CACAGCAGGGGG
 C T G A G T A C G C T A A G T C C G T A A C T G G T C A T G C A C G T A A C T G C T G A C T G A C T A G
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

SOX10/MA0442.1/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:ACACAGAAAGAAG
----ACAAAG---
 C T G A G T A C G C T A A G T C C G T A A C T G G T C A T G C A C G T A A C T G C T G A C T G A C T A G
A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--ACACAGAAAGAAG
CCACACAGCAGGAGA
 A C G T A C G T C T G A G T A C G C T A A G T C C G T A A C T G G T C A T G C A C G T A A C T G C T G A C T G A C T A G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:ACACAGAAAGAAG
-AACAGGAAGT--
 C T G A G T A C G C T A A G T C C G T A A C T G G T C A T G C A C G T A A C T G C T G A C T G A C T A G
A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T A C G T A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-ACACAGAAAGAAG
GAAAGTGAAAGT--
 A C G T C T G A G T A C G C T A A G T C C G T A A C T G G T C A T G C A C G T A A C T G C T G A C T G A C T A G
T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T A C G T A C G T