Information for 5-CTCACYKTTTATGAGC (Motif 25)

A G T C A G C T A G T C G C T A A G T C A G C T A C T G A G C T A G C T C G A T C G T A A C G T A C T G C T G A A C T G A T G C
Reverse Opposite:
A T C G T G A C A G C T G T A C C G T A A C G T C G T A C T G A C T G A G T A C C T G A C T A G C G A T A C T G C T G A C T A G
p-value:1e-7
log p-value:-1.639e+01
Information Content per bp:1.758
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.9 +/- 22.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX1/MA0878.1/Jaspar

Match Rank:1
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:CTCACYKTTTATGAGC
------TTTTATTGC-
 A G T C A G C T A G T C G C T A A G T C A G C T A C T G A G C T A G C T C G A T C G T A A C G T A C T G C T G A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:2
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CTCACYKTTTATGAGC
-----NTTTTATTACN
 A G T C A G C T A G T C G C T A A G T C A G C T A C T G A G C T A G C T C G A T C G T A A C G T A C T G C T G A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

PH0012.1_Cdx1/Jaspar

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CTCACYKTTTATGAGC---
---NAATTTTATTACCTNN
 A G T C A G C T A G T C G C T A A G T C A G C T A C T G A G C T A G C T C G A T C G T A A C G T A C T G C T G A A C T G A T G C A C G T A C G T A C G T
A C G T A C G T A C G T C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:CTCACYKTTTATGAGC
------TTTTATTRGN
 A G T C A G C T A G T C G C T A A G T C A G C T A C T G A G C T A G C T C G A T C G T A A C G T A C T G C T G A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CTCACYKTTTATGAGC
-----NTTTTATGAC-
 A G T C A G C T A G T C G C T A A G T C A G C T A C T G A G C T A G C T C G A T C G T A A C G T A C T G C T G A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:6
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CTCACYKTTTATGAGC---
---NAATTTTATTACCNNN
 A G T C A G C T A G T C G C T A A G T C A G C T A C T G A G C T A G C T C G A T C G T A A C G T A C T G C T G A A C T G A T G C A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

HOXD13/MA0909.1/Jaspar

Match Rank:7
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:CTCACYKTTTATGAGC
-----NTTTTATTGG-
 A G T C A G C T A G T C G C T A A G T C A G C T A C T G A G C T A G C T C G A T C G T A A C G T A C T G C T G A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CTCACYKTTTATGAGC---
---NNAATTAATGACCNNN
 A G T C A G C T A G T C G C T A A G T C A G C T A C T G A G C T A G C T C G A T C G T A A C G T A C T G C T G A A C T G A T G C A C G T A C G T A C G T
A C G T A C G T A C G T T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:9
Score:0.61
Offset:6
Orientation:forward strand
Alignment:CTCACYKTTTATGAGC
------TTTTATKRGG
 A G T C A G C T A G T C G C T A A G T C A G C T A C T G A G C T A G C T C G A T C G T A A C G T A C T G C T G A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

HOXC10/MA0905.1/Jaspar

Match Rank:10
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CTCACYKTTTATGAGC
-----NTTTTACGAC-
 A G T C A G C T A G T C G C T A A G T C A G C T A C T G A G C T A G C T C G A T C G T A A C G T A C T G C T G A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C A C G T