Information for 4-RAGGCAGWTWAAT (Motif 5)

T C A G C G T A A C T G A C T G G T A C C G T A A C T G C G T A A C G T C G A T C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T C G T A C G T A C G A T A G T C A C G T A C T G A G T C A G T C A C G T A G T C
p-value:1e-14
log p-value:-3.310e+01
Information Content per bp:1.890
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.3 +/- 25.1bp
Average Position of motif in Background33.0 +/- 9.4bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Myb/MA0100.2/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:RAGGCAGWTWAAT
-TGGCAGTTGN--
 T C A G C G T A A C T G A C T G G T A C C G T A A C T G C G T A A C G T C G A T C G T A C G T A A C G T
A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G A C G T A C G T

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:RAGGCAGWTWAAT
--GGCVGTTR---
 T C A G C G T A A C T G A C T G G T A C C G T A A C T G C G T A A C G T C G A T C G T A C G T A A C G T
A C G T A C G T C T A G C T A G A G T C T C A G A C T G A C G T A C G T C T G A A C G T A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--RAGGCAGWTWAAT-
NNNTGGCAGTTGGTNN
 A C G T A C G T T C A G C G T A A C T G A C T G G T A C C G T A A C T G C G T A A C G T C G A T C G T A C G T A A C G T A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

Arid3b/MA0601.1/Jaspar

Match Rank:4
Score:0.58
Offset:5
Orientation:forward strand
Alignment:RAGGCAGWTWAAT---
-----ATATTAATTAA
 T C A G C G T A A C T G A C T G G T A C C G T A A C T G C G T A A C G T C G A T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:RAGGCAGWTWAAT
-TGGCAGTTGG--
 T C A G C G T A A C T G A C T G G T A C C G T A A C T G C G T A A C G T C G A T C G T A C G T A A C G T
A C G T G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:6
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:RAGGCAGWTWAAT
-------TTTAAT
 T C A G C G T A A C T G A C T G G T A C C G T A A C T G C G T A A C G T C G A T C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:RAGGCAGWTWAAT
AAGGCAAGTGT--
 T C A G C G T A A C T G A C T G G T A C C G T A A C T G C G T A A C G T C G A T C G T A C G T A A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--RAGGCAGWTWAAT
ANCAGGAAGT-----
 A C G T A C G T T C A G C G T A A C T G A C T G G T A C C G T A A C T G C G T A A C G T C G A T C G T A C G T A A C G T
C G T A T G A C T A G C T G C A A C T G A C T G C G T A C G T A T C A G G A C T A C G T A C G T A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:9
Score:0.55
Offset:5
Orientation:forward strand
Alignment:RAGGCAGWTWAAT----
-----TGATTRATGGCY
 T C A G C G T A A C T G A C T G G T A C C G T A A C T G C G T A A C G T C G A T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:10
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:RAGGCAGWTWAAT--
-----TGATTGATGA
 T C A G C G T A A C T G A C T G G T A C C G T A A C T G C G T A A C G T C G A T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A