Information for 22-GGAGAGATCACWA (Motif 45)

A C T G A C T G C G T A A C T G C T G A A C T G C G T A A C G T A G T C G T C A A G T C G C A T C T G A
Reverse Opposite:
A G C T C G T A A C T G A C G T A C T G C G T A A C G T A G T C A G C T A G T C A C G T A G T C A G T C
p-value:1e-5
log p-value:-1.231e+01
Information Content per bp:1.885
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.5 +/- 25.8bp
Average Position of motif in Background83.5 +/- 4.9bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)2.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GGAGAGATCACWA--
AAGGCGAAATCATCGCA
 A C G T A C G T A C T G A C T G C G T A A C T G C T G A A C T G C G T A A C G T A G T C G T C A A G T C G C A T C T G A A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

PB0118.1_Esrra_2/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GGAGAGATCACWA--
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C T G A C T G C G T A A C T G C T G A A C T G C G T A A C G T A G T C G T C A A G T C G C A T C T G A A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PB0126.1_Gata5_2/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GGAGAGATCACWA-
GACAGAGATATCAGTGT
 A C G T A C G T A C G T A C T G A C T G C G T A A C T G C T G A A C T G C G T A A C G T A G T C G T C A A G T C G C A T C T G A A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GGAGAGATCACWA
--AGRGGTCA---
 A C T G A C T G C G T A A C T G C T G A A C T G C G T A A C G T A G T C G T C A A G T C G C A T C T G A
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GGAGAGATCACWA
---AAGGTCAC--
 A C T G A C T G C G T A A C T G C T G A A C T G C G T A A C G T A G T C G T C A A G T C G C A T C T G A
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGAGAGATCACWA-----
AADGAGVCANYASTACAGNC
 A C G T A C G T A C T G A C T G C G T A A C T G C T G A A C T G C G T A A C G T A G T C G T C A A G T C G C A T C T G A A C G T A C G T A C G T A C G T A C G T
G C T A T C G A C G A T C T A G C T G A C A T G T A G C G T A C C T G A C A T G G A T C G C T A T A G C G A C T C T G A A T G C T G C A C T A G C T G A G A T C

PB0057.1_Rxra_1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GGAGAGATCACWA--
NTNNNGGGGTCANGNNN
 A C G T A C G T A C T G A C T G C G T A A C T G C T G A A C T G C G T A A C G T A G T C G T C A A G T C G C A T C T G A A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

RHOXF1/MA0719.1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GGAGAGATCACWA
---NGGATTAN--
 A C T G A C T G C G T A A C T G C T G A A C T G C G T A A C G T A G T C G T C A A G T C G C A T C T G A
A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T

PH0162.1_Six2/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GGAGAGATCACWA--
AATGGGGTATCACGTTT
 A C G T A C G T A C T G A C T G C G T A A C T G C T G A A C T G C G T A A C G T A G T C G T C A A G T C G C A T C T G A A C G T A C G T
C T G A G C T A C A G T T C A G C T A G A C T G C T A G A C G T C T G A A C G T G A T C C T G A G A T C C A G T G C A T G A C T C A G T

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGAGAGATCACWA-
TCTCAAAGGTCACCTG
 A C G T A C G T A C T G A C T G C G T A A C T G C T G A A C T G C G T A A C G T A G T C G T C A A G T C G C A T C T G A A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G