Information for 14-GTCATTAAACCCCACA (Motif 27)

A T C G A G C T A G T C C G T A A G C T A C G T C G T A C G T A C G T A G T A C A G T C A G T C A G T C C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C T G A C T G A C T G A C T G C G A T A C G T A C G T G T C A C T G A C G A T A C T G C T G A A T G C
p-value:1e-8
log p-value:-1.995e+01
Information Content per bp:1.915
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.5 +/- 23.4bp
Average Position of motif in Background29.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0129.1_Otx1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTCATTAAACCCCACA
NNNAATTAATCCCCNCN
 A C G T A T C G A G C T A G T C C G T A A G C T A C G T C G T A C G T A C G T A G T A C A G T C A G T C A G T C C G T A A G T C C G T A
T C G A C G A T C G T A C G T A C T G A G A C T C G A T C G T A C G T A A C G T G A T C A G T C A T G C A G T C G C A T G T A C G A C T

PH0130.1_Otx2/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GTCATTAAACCCCACA
GANNATTAATCCCTNNN
 A C G T A T C G A G C T A G T C C G T A A G C T A C G T C G T A C G T A C G T A G T A C A G T C A G T C A G T C C G T A A G T C C G T A
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

HOXC10/MA0905.1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GTCATTAAACCCCACA
GTCGTAAAAT------
 A T C G A G C T A G T C C G T A A G C T A C G T C G T A C G T A C G T A G T A C A G T C A G T C A G T C C G T A A G T C C G T A
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GTCATTAAACCCCACA
GGAGGTCATTAATTAT----
 A C G T A C G T A C G T A C G T A T C G A G C T A G T C C G T A A G C T A C G T C G T A C G T A C G T A G T A C A G T C A G T C A G T C C G T A A G T C C G T A
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T A C G T A C G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GTCATTAAACCCCACA
---ATTAAA-------
 A T C G A G C T A G T C C G T A A G C T A C G T C G T A C G T A C G T A G T A C A G T C A G T C A G T C C G T A A G T C C G T A
A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GTCATTAAACCCCACA
GTAATTAA--------
 A T C G A G C T A G T C C G T A A G C T A C G T C G T A C G T A C G T A G T A C A G T C A G T C A G T C C G T A A G T C C G T A
T A C G A G C T G T C A G T C A A C G T G C A T T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTCATTAAACCCCACA
GNNNATTAATCCCTNCN
 A C G T A T C G A G C T A G T C C G T A A G C T A C G T C G T A C G T A C G T A G T A C A G T C A G T C A G T C C G T A A G T C C G T A
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GTCATTAAACCCCACA
NGCAATTAAA-------
 A C G T A T C G A G C T A G T C C G T A A G C T A C G T C G T A C G T A C G T A G T A C A G T C A G T C A G T C C G T A A G T C C G T A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GTCATTAAACCCCACA
-YCATTAMC-------
 A T C G A G C T A G T C C G T A A G C T A C G T C G T A C G T A C G T A G T A C A G T C A G T C A G T C C G T A A G T C C G T A
A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GTCATTAAACCCCACA
AGAGCCATAAAATTCG---
 A C G T A C G T A C G T A T C G A G C T A G T C C G T A A G C T A C G T C G T A C G T A C G T A G T A C A G T C A G T C A G T C C G T A A G T C C G T A
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G A C G T A C G T A C G T