Information for 12-GCTYTTAAAWACA (Motif 14)

C A T G A G T C A C G T A G C T C G A T A C G T G T C A C G T A C T G A C G T A G T C A G T A C G C T A
Reverse Opposite:
C A G T A C T G A C G T C G A T A G C T A C G T A C G T G T C A C G T A C T G A C G T A A C T G G T A C
p-value:1e-10
log p-value:-2.389e+01
Information Content per bp:1.762
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif39.3
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets54.5 +/- 24.8bp
Average Position of motif in Background53.5 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GCTYTTAAAWACA
GCTCGTAAAAA--
 C A T G A G T C A C G T A G C T C G A T A C G T G T C A C G T A C T G A C G T A G T C A G T A C G C T A
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:2
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---GCTYTTAAAWACA
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T C A T G A G T C A C G T A G C T C G A T A C G T G T C A C G T A C T G A C G T A G T C A G T A C G C T A
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GCTYTTAAAWACA
AAACCTCGTAAAATTT
 A C G T A C G T A C G T C A T G A G T C A C G T A G C T C G A T A C G T G T C A C G T A C T G A C G T A G T C A G T A C G C T A
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCTYTTAAAWACA
NCYAATAAAA---
 C A T G A G T C A C G T A G C T C G A T A C G T G T C A C G T A C T G A C G T A G T C A G T A C G C T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCTYTTAAAWACA
CCYMATAAAA---
 C A T G A G T C A C G T A G C T C G A T A C G T G T C A C G T A C T G A C G T A G T C A G T A C G C T A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCTYTTAAAWACA
CCTTTTATAGNC-
 C A T G A G T C A C G T A G C T C G A T A C G T G T C A C G T A C T G A C G T A G T C A G T A C G C T A
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCTYTTAAAWACA
-CCAATAAAAA--
 C A T G A G T C A C G T A G C T C G A T A C G T G T C A C G T A C T G A C G T A G T C A G T A C G C T A
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCTYTTAAAWACA
NGYCATAAAWCH-
 C A T G A G T C A C G T A G C T C G A T A C G T G T C A C G T A C T G A C G T A G T C A G T A C G C T A
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCTYTTAAAWACA
-CCAATAAAAA--
 C A T G A G T C A C G T A G C T C G A T A C G T G T C A C G T A C T G A C G T A G T C A G T A C G C T A
A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCTYTTAAAWACA
-GTCGTAAAAT--
 C A T G A G T C A C G T A G C T C G A T A C G T G T C A C G T A C T G A C G T A G T C A G T A C G C T A
A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T A C G T