Information for 11-GTYMCYAWAGTAA (Motif 19)

A C T G A C G T A G C T G T C A A G T C A G C T C G T A G C A T C G T A A C T G A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A G T C A C G T C G T A A C G T C T G A A C T G A C G T C T G A C G T A G T A C
p-value:1e-6
log p-value:-1.406e+01
Information Content per bp:1.864
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.37%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets68.2 +/- 32.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX5/MA0510.2/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GTYMCYAWAGTAA--
NGTTGCCATGGCAACG
 A C G T A C T G A C G T A G C T G T C A A G T C A G C T C G T A G C A T C G T A A C T G A C G T C G T A C G T A A C G T A C G T
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GTYMCYAWAGTAA--
CGTTGCCATGGCAACN
 A C G T A C T G A C G T A G C T G T C A A G T C A G C T C G T A G C A T C G T A A C T G A C G T C G T A C G T A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:3
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GTYMCYAWAGTAA--
CGTTGCCATGGCAACG
 A C G T A C T G A C G T A G C T G T C A A G T C A G C T C G T A G C A T C G T A A C T G A C G T C G T A C G T A A C G T A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G

RFX4/MA0799.1/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GTYMCYAWAGTAA--
CGTTGCCATGGCAACN
 A C G T A C T G A C G T A G C T G T C A A G T C A G C T C G T A G C A T C G T A A C T G A C G T C G T A C G T A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GTYMCYAWAGTAA
GGTTGCCATGGCAA
 A C G T A C T G A C G T A G C T G T C A A G T C A G C T C G T A G C A T C G T A A C T G A C G T C G T A C G T A
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GTYMCYAWAGTAA
NGTTGCCATGGCAA
 A C G T A C T G A C G T A G C T G T C A A G T C A G C T C G T A G C A T C G T A A C T G A C G T C G T A C G T A
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GTYMCYAWAGTAA--
GTTGCCATGGCAACM
 A C T G A C G T A G C T G T C A A G T C A G C T C G T A G C A T C G T A A C T G A C G T C G T A C G T A A C G T A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTYMCYAWAGTAA---
GTTGCCATGGCAACCG
 A C T G A C G T A G C T G T C A A G T C A G C T C G T A G C A T C G T A A C T G A C G T C G T A C G T A A C G T A C G T A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

Rfx1/MA0509.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GTYMCYAWAGTAA-
GTTGCCATGGCAAC
 A C T G A C G T A G C T G T C A A G T C A G C T C G T A G C A T C G T A A C T G A C G T C G T A C G T A A C G T
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:10
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GTYMCYAWAGTAA---
------AAAGTAAACA
 A C T G A C G T A G C T G T C A A G T C A G C T C G T A G C A T C G T A A C T G A C G T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A