Information for 15-CGCCAGAAAGGMGGAG (Motif 25)

A T G C T A C G A T G C A G T C C G T A A T C G C G T A C T G A C G T A A C T G T A C G T G A C C T A G A C T G C T G A A C T G
Reverse Opposite:
A G T C A G C T G T A C G A T C A C T G A G T C G T A C C G A T A G C T C G A T T A G C C G A T A C T G A T C G A G T C A T C G
p-value:1e-8
log p-value:-2.071e+01
Information Content per bp:1.733
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif9.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.2 +/- 23.5bp
Average Position of motif in Background26.1 +/- 21.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SPI1/MA0080.4/Jaspar

Match Rank:1
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CGCCAGAAAGGMGGAG--
----AAAAAGCGGAAGTA
 A T G C T A C G A T G C A G T C C G T A A T C G C G T A C T G A C G T A A C T G T A C G T G A C C T A G A C T G C T G A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T T C G A C T G A C G T A C G T A C G T A T A C G T G A C C T A G A T C G G T C A C G T A A T C G G A C T C G T A

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CGCCAGAAAGGMGGAG
---AACAAAGG-----
 A T G C T A C G A T G C A G T C C G T A A T C G C G T A C T G A C G T A A C T G T A C G T G A C C T A G A C T G C T G A A C T G
A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:3
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:CGCCAGAAAGGMGGAG
----ACAAAG------
 A T G C T A C G A T G C A G T C C G T A A T C G C G T A C T G A C G T A A C T G T A C G T G A C C T A G A C T G C T G A A C T G
A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:4
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CGCCAGAAAGGMGGAG
AAGCCATAAAA------
 A C G T A T G C T A C G A T G C A G T C C G T A A T C G C G T A C T G A C G T A A C T G T A C G T G A C C T A G A C T G C T G A A C T G
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

SPIC/MA0687.1/Jaspar

Match Rank:5
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CGCCAGAAAGGMGGAG--
----AAAAAGAGGAAGTA
 A T G C T A C G A T G C A G T C C G T A A T C G C G T A C T G A C G T A A C T G T A C G T G A C C T A G A C T G C T G A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T G T C A C T G A G T C A G T C A C G T A T A C G T G C A A T C G C A T G G C T A T G C A C T A G G C A T G T C A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CGCCAGAAAGGMGGAG
NGYCATAAAWCH----
 A T G C T A C G A T G C A G T C C G T A A T C G C G T A C T G A C G T A A C T G T A C G T G A C C T A G A C T G C T G A A C T G
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CGCCAGAAAGGMGGAG
-VRRACAAWGG-----
 A T G C T A C G A T G C A G T C C G T A A T C G C G T A C T G A C G T A A C T G T A C G T G A C C T A G A C T G C T G A A C T G
A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:8
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:CGCCAGAAAGGMGGAG----
---NAGANTGGCGGGGNGNA
 A T G C T A C G A T G C A G T C C G T A A T C G C G T A C T G A C G T A A C T G T A C G T G A C C T A G A C T G C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:CGCCAGAAAGGMGGAG
---RACAAWGG-----
 A T G C T A C G A T G C A G T C C G T A A T C G C G T A C T G A C G T A A C T G T A C G T G A C C T A G A C T G C T G A A C T G
A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:CGCCAGAAAGGMGGAG
-AAAACAAAGG-----
 A T G C T A C G A T G C A G T C C G T A A T C G C G T A C T G A C G T A A C T G T A C G T G A C C T A G A C T G C T G A A C T G
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T