Information for 4-ATTRAAGWTTAATGAG (Motif 6)

G T C A G C A T A C G T T C G A C G T A C T G A C T A G G C A T C G A T A C G T C T G A C G T A C G A T C T A G G T C A A T C G
Reverse Opposite:
T A G C A C G T A G T C C G T A A C G T G A C T G T C A C G T A C G T A G A T C A G C T C G A T A G C T T C G A C G T A A C G T
p-value:1e-13
log p-value:-3.210e+01
Information Content per bp:1.695
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.3 +/- 31.1bp
Average Position of motif in Background47.6 +/- 19.1bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0073.1_Hoxc9/Jaspar

Match Rank:1
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:ATTRAAGWTTAATGAG----
----NNAATTAATGACCNNN
 G T C A G C A T A C G T T C G A C G T A C T G A C T A G G C A T C G A T A C G T C T G A C G T A C G A T C T A G G T C A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:ATTRAAGWTTAATGAG
-ATGAATATTCATGAG
 G T C A G C A T A C G T T C G A C G T A C T G A C T A G G C A T C G A T A C G T C T G A C G T A C G A T C T A G G T C A A T C G
A C G T G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

POU6F2/MA0793.1/Jaspar

Match Rank:3
Score:0.64
Offset:8
Orientation:reverse strand
Alignment:ATTRAAGWTTAATGAG--
--------NTAATGAGCT
 G T C A G C A T A C G T T C G A C G T A C T G A C T A G G C A T C G A T A C G T C T G A C G T A C G A T C T A G G T C A A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T

HOXC10/MA0905.1/Jaspar

Match Rank:4
Score:0.64
Offset:6
Orientation:reverse strand
Alignment:ATTRAAGWTTAATGAG
------NTTTTACGAC
 G T C A G C A T A C G T T C G A C G T A C T G A C T A G G C A T C G A T A C G T C T G A C G T A C G A T C T A G G T C A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C

PH0151.1_Pou6f1_1/Jaspar

Match Rank:5
Score:0.63
Offset:4
Orientation:forward strand
Alignment:ATTRAAGWTTAATGAG-----
----GACGATAATGAGCTTGC
 G T C A G C A T A C G T T C G A C G T A C T G A C T A G G C A T C G A T A C G T C T G A C G T A C G A T C T A G G T C A A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C

NKX6-1/MA0674.1/Jaspar

Match Rank:6
Score:0.63
Offset:8
Orientation:reverse strand
Alignment:ATTRAAGWTTAATGAG
--------TTAATTAN
 G T C A G C A T A C G T T C G A C G T A C T G A C T A G G C A T C G A T A C G T C T G A C G T A C G A T C T A G G T C A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C

PH0068.1_Hoxc13/Jaspar

Match Rank:7
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:ATTRAAGWTTAATGAG----
----NAATTTTACGAGNTNN
 G T C A G C A T A C G T T C G A C G T A C T G A C T A G G C A T C G A T A C G T C T G A C G T A C G A T C T A G G T C A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

Hoxa11/MA0911.1/Jaspar

Match Rank:8
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:ATTRAAGWTTAATGAG-
-----ANTTTTACGACC
 G T C A G C A T A C G T T C G A C G T A C T G A C T A G G C A T C G A T A C G T C T G A C G T A C G A T C T A G G T C A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C

PH0120.1_Nkx6-3/Jaspar

Match Rank:9
Score:0.62
Offset:3
Orientation:forward strand
Alignment:ATTRAAGWTTAATGAG----
---GAAAATTAATTACTTTG
 G T C A G C A T A C G T T C G A C G T A C T G A C T A G G C A T C G A T A C G T C T G A C G T A C G A T C T A G G T C A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T G C A G C A T C G T A G C T A C G A T G A C T C G T A C G T A C G A T A C G T C T G A T G A C A G C T A C G T A G C T A C T G

PH0150.1_Pou4f3/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:forward strand
Alignment:ATTRAAGWTTAATGAG---
---AGTTATTAATGAGGTC
 G T C A G C A T A C G T T C G A C G T A C T G A C T A G G C A T C G A T A C G T C T G A C G T A C G A T C T A G G T C A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T G C T A T C A G C A G T G C A T C G T A G A C T C G A T C G T A C G T A G A C T C A T G G T C A C T A G A C T G G A C T G A T C