Information for 7-AGGGTGGGAA (Motif 12)

C G T A A C T G C T A G A C T G C G A T C T A G A T C G A T C G T C G A C T G A
Reverse Opposite:
A G C T A G C T T A G C T A G C G A T C G C T A A G T C G A T C T G A C G C A T
p-value:1e-10
log p-value:-2.438e+01
Information Content per bp:1.753
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif5.13%
Number of Background Sequences with motif735.0
Percentage of Background Sequences with motif1.53%
Average Position of motif in Targets57.4 +/- 27.4bp
Average Position of motif in Background50.1 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0013.1_Eomes_1/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---AGGGTGGGAA----
GAAAAGGTGTGAAAATT
 A C G T A C G T A C G T C G T A A C T G C T A G A C T G C G A T C T A G A T C G A T C G T C G A C T G A A C G T A C G T A C G T A C G T
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:AGGGTGGGAA--
--CSTGGGAAAD
 C G T A A C T G C T A G A C T G C G A T C T A G A T C G A T C G T C G A C T G A A C G T A C G T
A C G T A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AGGGTGGGAA
AAGGTGTKAA
 C G T A A C T G C T A G A C T G C G A T C T A G A T C G A T C G T C G A C T G A
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A

PB0114.1_Egr1_2/Jaspar

Match Rank:4
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---AGGGTGGGAA---
TGCGGAGTGGGACTGG
 A C G T A C G T A C G T C G T A A C T G C T A G A C T G C G A T C T A G A T C G A T C G T C G A C T G A A C G T A C G T A C G T
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

E2F6/MA0471.1/Jaspar

Match Rank:5
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AGGGTGGGAA--
-GGGCGGGAAGG
 C G T A A C T G C T A G A C T G C G A T C T A G A T C G A T C G T C G A C T G A A C G T A C G T
A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G

TBX21/MA0690.1/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGGGTGGGAA
AAGGTGTGAA
 C G T A A C T G C T A G A C T G C G A T C T A G A T C G A T C G T C G A C T G A
C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A

EOMES/MA0800.1/Jaspar

Match Rank:7
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGGGTGGGAA---
AAGGTGTGAAAAT
 C G T A A C T G C T A G A C T G C G A T C T A G A T C G A T C G T C G A C T G A A C G T A C G T A C G T
C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T

PB0167.1_Sox13_2/Jaspar

Match Rank:8
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----AGGGTGGGAA---
GTATTGGGTGGGTAATT
 A C G T A C G T A C G T A C G T C G T A A C T G C T A G A C T G C G A T C T A G A T C G A T C G T C G A C T G A A C G T A C G T A C G T
C T A G C G A T C T G A G A C T A G C T C A T G C A T G C T A G G C A T A C T G C A T G C A T G C G A T G C T A G C A T G C A T C A G T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AGGGTGGGAA--
--GGCGGGAARN
 C G T A A C T G C T A G A C T G C G A T C T A G A T C G A T C G T C G A C T G A A C G T A C G T
A C G T A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G

TBX2/MA0688.1/Jaspar

Match Rank:10
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGGGTGGGAA-
AAGGTGTGAAA
 C G T A A C T G C T A G A C T G C G A T C T A G A T C G A T C G T C G A C T G A A C G T
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A