Information for 6-CGSGGGAAGTCCC (Motif 10)

T A G C A T C G T A G C T C A G C A T G T C A G C T G A T C G A A C T G A C G T T A G C A G T C G T A C
Reverse Opposite:
C A T G C T A G A T C G T G C A T A G C A G C T G A C T A G T C G T A C A G T C A T C G T A G C A T C G
p-value:1e-10
log p-value:-2.506e+01
Information Content per bp:1.632
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.17%
Number of Background Sequences with motif286.7
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets50.8 +/- 26.7bp
Average Position of motif in Background51.1 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:1
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CGSGGGAAGTCCC
-GGGGGAATCCCC
 T A G C A T C G T A G C T C A G C A T G T C A G C T G A T C G A A C T G A C G T T A G C A G T C G T A C
A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:CGSGGGAAGTCCC--
---GGGAAATCCCCN
 T A G C A T C G T A G C T C A G C A T G T C A G C T G A T C G A A C T G A C G T T A G C A G T C G T A C A C G T A C G T
A C G T A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:CGSGGGAAGTCCC
---GGAAATCCCC
 T A G C A T C G T A G C T C A G C A T G T C A G C T G A T C G A A C T G A C G T T A G C A G T C G T A C
A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CGSGGGAAGTCCC
GGCGGGAARN---
 T A G C A T C G T A G C T C A G C A T G T C A G C T G A T C G A A C T G A C G T T A G C A G T C G T A C
T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:CGSGGGAAGTCCC-
----GGAAANCCCC
 T A G C A T C G T A G C T C A G C A T G T C A G C T G A T C G A A C T G A C G T T A G C A G T C G T A C A C G T
A C G T A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

NFKB2/MA0778.1/Jaspar

Match Rank:6
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CGSGGGAAGTCCC--
--AGGGGATTCCCCT
 T A G C A T C G T A G C T C A G C A T G T C A G C T G A T C G A A C T G A C G T T A G C A G T C G T A C A C G T A C G T
A C G T A C G T T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

E2F6/MA0471.1/Jaspar

Match Rank:7
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CGSGGGAAGTCCC
GGGCGGGAAGG---
 A C G T T A G C A T C G T A G C T C A G C A T G T C A G C T G A T C G A A C T G A C G T T A G C A G T C G T A C
C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G A C G T A C G T A C G T

E2F4/MA0470.1/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CGSGGGAAGTCCC
GGGCGGGAAGG---
 A C G T T A G C A T C G T A G C T C A G C A T G T C A G C T G A T C G A A C T G A C G T T A G C A G T C G T A C
A C T G T A C G A T C G A G T C A C T G T A C G T A C G C T G A C T G A T C A G T C A G A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:9
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CGSGGGAAGTCCC
---GGAAATTCCC
 T A G C A T C G T A G C T C A G C A T G T C A G C T G A T C G A A C T G A C G T T A G C A G T C G T A C
A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:10
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CGSGGGAAGTCCC
---GGGAATTTCC
 T A G C A T C G T A G C T C A G C A T G T C A G C T G A T C G A A C T G A C G T T A G C A G T C G T A C
A C G T A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C