Information for 11-CCAAKTMSCGCRG (Motif 19)

A G T C A G T C C G T A C G T A A C G T A G C T G T C A A T C G A G T C A C T G A G T C C T G A A C T G
Reverse Opposite:
A G T C G A C T C T A G A G T C A C T G A T G C A C G T C T G A G T C A A C G T A C G T A C T G A C T G
p-value:1e-9
log p-value:-2.099e+01
Information Content per bp:1.866
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif11.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets36.7 +/- 17.8bp
Average Position of motif in Background60.5 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0109.1_Nkx1-1/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCAAKTMSCGCRG
TGCGCTAATTAGTGGGA
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A G C T G T C A A T C G A G T C A C T G A G T C C T G A A C T G
C G A T T A C G G T A C T C A G A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G C T C A T G T A C G A C T G T C G A

PH0107.1_Msx2/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCAAKTMSCGCRG
GAAGACCAATTAGCGCT-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A G C T G T C A A T C G A G T C A C T G A G T C C T G A A C T G
T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T A C G T

GBX1/MA0889.1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCAAKTMSCGCRG
ACTAATTAGC----
 A C G T A G T C A G T C C G T A C G T A A C G T A G C T G T C A A T C G A G T C A C T G A G T C C T G A A C T G
T C G A A T G C G A C T T C G A T G C A G A C T G A C T G C T A T A C G A G T C A C G T A C G T A C G T A C G T

PH0098.1_Lhx8/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CCAAKTMSCGCRG
ACCCCTAATTAGCGGTG
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A G C T G T C A A T C G A G T C A C T G A G T C C T G A A C T G
G C T A T G A C T G A C T G A C T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A G T C C A T G C A T G A C G T C T A G

MSX2/MA0708.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCAAKTMSCGCRG
CCAATTAA-----
 A G T C A G T C C G T A C G T A A C G T A G C T G T C A A T C G A G T C A C T G A G T C C T G A A C T G
T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T A C G T A C G T A C G T

EN2/MA0642.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCAAKTMSCGCRG
CCCAATTAGC----
 A C G T A G T C A G T C C G T A C G T A A C G T A G C T G T C A A T C G A G T C A C T G A G T C C T G A A C T G
T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C A C G T A C G T A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCAAKTMSCGCRG
CCAATTAG-----
 A G T C A G T C C G T A C G T A A C G T A G C T G T C A A T C G A G T C A C T G A G T C C T G A A C T G
A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T A C G T A C G T A C G T

PH0127.1_Nobox/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CCAAKTMSCGCRG
GNTNNCTAATTAGNNCG-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A G C T G T C A A T C G A G T C A C T G A G T C C T G A A C T G
T A C G C T G A C G A T C G T A T G A C A G T C G A C T C T G A C G T A G C A T A G C T C T G A T C A G A G T C A T C G T A G C A T C G A C G T

HESX1/MA0894.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CCAAKTMSCGCRG
NCCAATTANC----
 A C G T A G T C A G T C C G T A C G T A A C G T A G C T G T C A A T C G A G T C A C T G A G T C C T G A A C T G
C T A G A G T C G A T C C T G A G T C A A G C T G A C T G C T A C T A G A G T C A C G T A C G T A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCAAKTMSCGCRG
CCAATTAA-----
 A G T C A G T C C G T A C G T A A C G T A G C T G T C A A T C G A G T C A C T G A G T C C T G A A C T G
T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T A C G T A C G T A C G T A C G T