Information for 17-ACTCGCAAAGCCA (Motif 25)

C G T A A G T C G C A T A T G C A T C G G T A C C G T A G T C A G T C A A C T G A G T C A G T C G C T A
Reverse Opposite:
C A G T C T A G A C T G G T A C C A G T C A G T C G A T A C T G T A G C T A C G C G T A T A C G G A C T
p-value:1e-6
log p-value:-1.475e+01
Information Content per bp:1.694
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets68.7 +/- 3.9bp
Average Position of motif in Background13.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.57
Offset:5
Orientation:forward strand
Alignment:ACTCGCAAAGCCA--
-----CAAGGHCANV
 C G T A A G T C G C A T A T G C A T C G G T A C C G T A G T C A G T C A A C T G A G T C A G T C G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:2
Score:0.57
Offset:3
Orientation:forward strand
Alignment:ACTCGCAAAGCCA
---NTCAAGGTCA
 C G T A A G T C G C A T A T G C A T C G G T A C C G T A G T C A G T C A A C T G A G T C A G T C G C T A
A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.56
Offset:4
Orientation:forward strand
Alignment:ACTCGCAAAGCCA
----GCTAATCC-
 C G T A A G T C G C A T A T G C A T C G G T A C C G T A G T C A G T C A A C T G A G T C A G T C G C T A
A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:ACTCGCAAAGCCA-
--------TGCCAA
 C G T A A G T C G C A T A T G C A T C G G T A C C G T A G T C A G T C A A C T G A G T C A G T C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:ACTCGCAAAGCCA
---BTCAAGGTCA
 C G T A A G T C G C A T A T G C A T C G G T A C C G T A G T C A G T C A A C T G A G T C A G T C G C T A
A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

RHOXF1/MA0719.1/Jaspar

Match Rank:6
Score:0.54
Offset:5
Orientation:forward strand
Alignment:ACTCGCAAAGCCA
-----ATAATCCC
 C G T A A G T C G C A T A T G C A T C G G T A C C G T A G T C A G T C A A C T G A G T C A G T C G C T A
A C G T A C G T A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.53
Offset:6
Orientation:forward strand
Alignment:ACTCGCAAAGCCA--
------CGTGCCAAG
 C G T A A G T C G C A T A T G C A T C G G T A C C G T A G T C A G T C A A C T G A G T C A G T C G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.53
Offset:6
Orientation:forward strand
Alignment:ACTCGCAAAGCCA-
------TAATCCCN
 C G T A A G T C G C A T A T G C A T C G G T A C C G T A G T C A G T C A A C T G A G T C A G T C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:ACTCGCAAAGCCA
-TTGCCAAG----
 C G T A A G T C G C A T A T G C A T C G G T A C C G T A G T C A G T C A A C T G A G T C A G T C G C T A
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

PH0035.1_Gsc/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:ACTCGCAAAGCCA----
AATCGTTAATCCCTTTA
 C G T A A G T C G C A T A T G C A T C G G T A C C G T A G T C A G T C A A C T G A G T C A G T C G C T A A C G T A C G T A C G T A C G T
G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C