Information for 1-CTTGAGAGWGGTT (Motif 4)

A G T C A C G T A C G T A C T G C T G A A C T G C G T A A C T G C G A T A T C G A C T G C G A T A C G T
Reverse Opposite:
C G T A G C T A A G T C A T G C C G T A A G T C A C G T A G T C A G C T A G T C G T C A T C G A C T A G
p-value:1e-10
log p-value:-2.468e+01
Information Content per bp:1.835
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.6 +/- 28.7bp
Average Position of motif in Background55.1 +/- 14.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0140.1_Irf6_2/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTTGAGAGWGGTT
NNNACCGAGAGTNNN-
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G C T G A A C T G C G T A A C T G C G A T A T C G A C T G C G A T A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTTGAGAGWGGTT
CTTGAGTGGCT--
 A G T C A C G T A C G T A C T G C T G A A C T G C G T A A C T G C G A T A T C G A C T G C G A T A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:3
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CTTGAGAGWGGTT
GNNACCGAGAATNNN-
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G C T G A A C T G C G T A A C T G C G A T A T C G A C T G C G A T A C G T
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTTGAGAGWGGTT
BTBRAGTGSN---
 A G T C A C G T A C G T A C T G C T G A A C T G C G T A A C T G C G A T A T C G A C T G C G A T A C G T
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CTTGAGAGWGGTT---
--GGAGAAAGGTGCGA
 A G T C A C G T A C G T A C T G C T G A A C T G C G T A A C T G C G A T A T C G A C T G C G A T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTTGAGAGWGGTT
CTYRAGTGSY---
 A G T C A C G T A C G T A C T G C T G A A C T G C G T A A C T G C G A T A T C G A C T G C G A T A C G T
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CTTGAGAGWGGTT
---TTRAGTGSYK
 A G T C A C G T A C G T A C T G C T G A A C T G C G T A A C T G C G A T A T C G A C T G C G A T A C G T
A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CTTGAGAGWGGTT
-TTGACAGC----
 A G T C A C G T A C G T A C T G C T G A A C T G C G T A A C T G C G A T A T C G A C T G C G A T A C G T
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CTTGAGAGWGGTT
---TTGAGTGSTT
 A G T C A C G T A C G T A C T G C T G A A C T G C G T A A C T G C G A T A T C G A C T G C G A T A C G T
A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

PH0141.1_Pknox2/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CTTGAGAGWGGTT-
NNATTGACAGGTGCTT
 A C G T A C G T A G T C A C G T A C G T A C T G C T G A A C T G C G T A A C T G C G A T A T C G A C T G C G A T A C G T A C G T
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T