Information for 13-GAAGTCACTGTCC (Motif 24)

A C T G C G T A C G T A A C T G A C G T A G T C G T C A T G A C A C G T C T A G A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A G T C C G T A A C T G A C G T A C T G C G T A A G T C C G A T A C G T A G T C
p-value:1e-6
log p-value:-1.580e+01
Information Content per bp:1.935
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.9 +/- 28.8bp
Average Position of motif in Background45.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)2.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GAAGTCACTGTCC-
NAGGTCANTGACCT
 A C T G C G T A C G T A A C T G A C G T A G T C G T C A T G A C A C G T C T A G A C G T A G T C A G T C A C G T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

Nr2e1/MA0676.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAAGTCACTGTCC
AAAAGTCAA-----
 A C G T A C T G C G T A C G T A A C T G A C G T A G T C G T C A T G A C A C G T C T A G A C G T A G T C A G T C
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GAAGTCACTGTCC
--AGTCACGC---
 A C T G C G T A C G T A A C T G A C G T A G T C G T C A T G A C A C G T C T A G A C G T A G T C A G T C
A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GAAGTCACTGTCC
AGGGAAGTCATTTCT-
 A C G T A C G T A C G T A C T G C G T A C G T A A C T G A C G T A G T C G T C A T G A C A C G T C T A G A C G T A G T C A G T C
C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAAGTCACTGTCC---
GGGGTCAAAGTCCAAT
 A C T G C G T A C G T A A C T G A C G T A G T C G T C A T G A C A C G T C T A G A C G T A G T C A G T C A C G T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GAAGTCACTGTCC
VAGRACAKNCTGTBC
 A C G T A C G T A C T G C G T A C G T A A C T G A C G T A G T C G T C A T G A C A C G T C T A G A C G T A G T C A G T C
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

PB0004.1_Atf1_1/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GAAGTCACTGTCC
NCGATGACGTCATCGN--
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C T G A C G T A G T C G T C A T G A C A C G T C T A G A C G T A G T C A G T C
G A C T G A T C C A T G T C G A A G C T A C T G C G T A A G T C C T A G G C A T G T A C C T G A A G C T G T A C T C A G G A C T A C G T A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:8
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GAAGTCACTGTCC---
NNNTGAACTCNNTGACCTCN
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C T G A C G T A G T C G T C A T G A C A C G T C T A G A C G T A G T C A G T C A C G T A C G T A C G T
G T A C G A T C G T C A G C A T T C A G G T C A G T C A G T A C A G C T A G T C C G T A T A C G G C A T T A C G T G C A G T A C G A T C G A C T A G T C G A C T

RXRA::VDR/MA0074.1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAAGTCACTGTCC-
TGAACCCGATGACCC
 A C G T A C T G C G T A C G T A A C T G A C G T A G T C G T C A T G A C A C G T C T A G A C G T A G T C A G T C A C G T
A G C T C T A G C G T A C G T A A G T C A G C T A G T C A C T G C G A T A G C T C T A G C G T A G T A C A G T C A G T C

CRE(bZIP)/Promoter/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GAAGTCACTGTCC
GTGACGTCACCG---
 A C G T A C G T A C T G C G T A C G T A A C T G A C G T A G T C G T C A T G A C A C G T C T A G A C G T A G T C A G T C
T A C G A G C T A T C G C T G A A G T C C T A G A G C T A T G C C T G A A T G C T A G C T A C G A C G T A C G T A C G T