Information for 3-RGATTATGAG (Motif 13)

C T A G A C T G G T C A A C G T A C G T C G T A C A G T A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C G T C A A C G T C G T A G T C A A C G T A G T C A G T C
p-value:1e-9
log p-value:-2.077e+01
Information Content per bp:1.901
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.72%
Number of Background Sequences with motif19.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets43.4 +/- 29.7bp
Average Position of motif in Background62.9 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0185.1_Tcf1_2/Jaspar

Match Rank:1
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------RGATTATGAG
TTGCCCGGATTAGG--
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G G T C A A C G T A C G T C G T A C A G T A C T G C G T A A C T G
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-RGATTATGAG
NGGATTAA---
 A C G T C T A G A C T G G T C A A C G T A C G T C G T A C A G T A C T G C G T A A C T G
T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--RGATTATGAG-----
AAACATAATGAGGTTGC
 A C G T A C G T C T A G A C T G G T C A A C G T A C G T C G T A C A G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
T C G A G T C A G C T A T A G C G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G T A C G G C A T C A G T A C T G G T A C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-RGATTATGAG
RGGATTAR---
 A C G T C T A G A C T G G T C A A C G T A C G T C G T A C A G T A C T G C G T A A C T G
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--RGATTATGAG
GNGGATTAGN--
 A C G T A C G T C T A G A C T G G T C A A C G T A C G T C G T A C A G T A C T G C G T A A C T G
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-RGATTATGAG
CGGATTAN---
 A C G T C T A G A C T G G T C A A C G T A C G T C G T A C A G T A C T G C G T A A C T G
T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-RGATTATGAG
GGGATTANN--
 A C G T C T A G A C T G G T C A A C G T A C G T C G T A C A G T A C T G C G T A A C T G
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--RGATTATGAG
NNGGATTAGN--
 A C G T A C G T C T A G A C T G G T C A A C G T A C G T C G T A C A G T A C T G C G T A A C T G
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--RGATTATGAG-----
GACGATAATGAGCTTGC
 A C G T A C G T C T A G A C T G G T C A A C G T A C G T C G T A C A G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:10
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--RGATTATGAG
VRGGATTARN--
 A C G T A C G T C T A G A C T G G T C A A C G T A C G T C G T A C A G T A C T G C G T A A C T G
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T