Information for 6-KGTCTRRAAKTTG (Motif 8)

A C T G A C T G A C G T A G T C A C G T C T G A C T A G G T C A C G T A A C G T C G A T A C G T A C T G
Reverse Opposite:
A G T C C G T A C G T A G T C A A C G T A C G T A G T C A G C T C G T A A C T G G T C A A G T C G T A C
p-value:1e-12
log p-value:-2.770e+01
Information Content per bp:1.869
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets69.7 +/- 20.6bp
Average Position of motif in Background57.6 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----KGTCTRRAAKTTG
NNTNNTGTCTGGNNTNG-
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A G T C A C G T C T G A C T A G G T C A C G T A A C G T C G A T A C G T A C T G
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:KGTCTRRAAKTTG
GGTCTGGCAT---
 A C T G A C T G A C G T A G T C A C G T C T G A C T A G G T C A C G T A A C G T C G A T A C G T A C T G
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-KGTCTRRAAKTTG
CTGTCTGG------
 A C G T A C T G A C T G A C G T A G T C A C G T C T G A C T A G G T C A C G T A A C G T C G A T A C G T A C T G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:KGTCTRRAAKTTG
TGTCTAGACG---
 A C T G A C T G A C G T A G T C A C G T C T G A C T A G G T C A C G T A A C G T C G A T A C G T A C T G
C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-KGTCTRRAAKTTG
TWGTCTGV------
 A C G T A C T G A C T G A C G T A G T C A C G T C T G A C T A G G T C A C G T A A C G T C G A T A C G T A C T G
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---KGTCTRRAAKTTG
VBSYGTCTGG------
 A C G T A C G T A C G T A C T G A C T G A C G T A G T C A C G T C T G A C T A G G T C A C G T A A C G T C G A T A C G T A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-KGTCTRRAAKTTG-
NGNTCTAGAACCNGV
 A C G T A C T G A C T G A C G T A G T C A C G T C T G A C T A G G T C A C G T A A C G T C G A T A C G T A C T G A C G T
C T G A T C A G G C T A A G C T A G T C G A C T C T G A C T A G T G C A C T G A A G T C G T A C G A T C A C T G T C G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:KGTCTRRAAKTTG
TGTCTGDCACCT-
 A C T G A C T G A C G T A G T C A C G T C T G A C T A G G T C A C G T A A C G T C G A T A C G T A C T G
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

PB0090.1_Zbtb12_1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--KGTCTRRAAKTTG--
NNGATCTAGAACCTNNN
 A C G T A C G T A C T G A C T G A C G T A G T C A C G T C T G A C T A G G T C A C G T A A C G T C G A T A C G T A C T G A C G T A C G T
T C A G A C G T C T A G C G T A A G C T A G T C A C G T C T G A A C T G G C T A C G T A A G T C T G A C A G C T C G A T G T C A T A C G

MEF2A/MA0052.3/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:KGTCTRRAAKTTG-
--TCTAAAAATAGA
 A C T G A C T G A C G T A G T C A C G T C T G A C T A G G T C A C G T A A C G T C G A T A C G T A C T G A C G T
A C G T A C G T C A G T G A T C A G C T G C T A C G T A G C T A C G T A G C T A A G C T G T C A C T A G G T C A