Information for 10-CTAATTAAGC (Motif 22)

A G T C C G A T G C T A C G T A A G C T A C G T G T C A C G T A A T C G A G T C
Reverse Opposite:
C T A G A T G C C G A T A C G T C G T A C T G A A C G T C G A T C G T A C T A G
p-value:1e-8
log p-value:-2.031e+01
Information Content per bp:1.850
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif28.4
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets56.9 +/- 28.8bp
Average Position of motif in Background47.6 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LBX1/MA0618.1/Jaspar

Match Rank:1
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:CTAATTAAGC
CTAATTAA--
 A G T C C G A T G C T A C G T A A G C T A C G T G T C A C G T A A T C G A G T C
T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T A C G T

mix-a/MA0621.1/Jaspar

Match Rank:2
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTAAGC
NCTAATTAANN
 A C G T A G T C C G A T G C T A C G T A A G C T A C G T G T C A C G T A A T C G A G T C
G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T

LHX2/MA0700.1/Jaspar

Match Rank:3
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-CTAATTAAGC
ACTAATTAAC-
 A C G T A G T C C G A T G C T A C G T A A G C T A C G T G T C A C G T A A T C G A G T C
T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C A C G T

PH0175.1_Vax2/Jaspar

Match Rank:4
Score:0.83
Offset:-5
Orientation:forward strand
Alignment:-----CTAATTAAGC-
GTGCACTAATTAAGAC
 A C G T A C G T A C G T A C G T A C G T A G T C C G A T G C T A C G T A A G C T A C G T G T C A C G T A A T C G A G T C A C G T
A C T G C G A T T A C G A T G C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C G T A T C G A A C T G T C G A T A G C

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:5
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTAAGC
NCTAATTA---
 A C G T A G T C C G A T G C T A C G T A A G C T A C G T G T C A C G T A A T C G A G T C
T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T A C G T A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:6
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CTAATTAAGC
GTAATTAA--
 A G T C C G A T G C T A C G T A A G C T A C G T G T C A C G T A A T C G A G T C
T A C G A G C T G T C A G T C A A C G T G C A T T C G A G C T A A C G T A C G T

NOTO/MA0710.1/Jaspar

Match Rank:7
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-CTAATTAAGC
GCTAATTAGC-
 A C G T A G T C C G A T G C T A C G T A A G C T A C G T G T C A C G T A A T C G A G T C
T A C G G A T C G C A T G T C A C G T A A C G T C A G T C T G A T C A G A T G C A C G T

VSX2/MA0726.1/Jaspar

Match Rank:8
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CTAATTAAGC
CTAATTAG--
 A G T C C G A T G C T A C G T A A G C T A C G T G T C A C G T A A T C G A G T C
A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G A C G T A C G T

LMX1A/MA0702.1/Jaspar

Match Rank:9
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CTAATTAAGC
TTAATTAA--
 A G T C C G A T G C T A C G T A A G C T A C G T G T C A C G T A A T C G A G T C
A G C T G A C T C T G A G C T A G C A T C G A T C T G A T C G A A C G T A C G T

Lhx4/MA0704.1/Jaspar

Match Rank:10
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CTAATTAAGC
TTAATTAA--
 A G T C C G A T G C T A C G T A A G C T A C G T G T C A C G T A A T C G A G T C
A G C T G A C T T G C A C G T A A C G T A G C T C T G A T C G A A C G T A C G T