Information for 7-KCCAATCAGA (Motif 17)

A C G T A T G C G T A C G T C A C G T A C G A T A G T C C G T A T A C G C G T A
Reverse Opposite:
G C A T A T G C A C G T T C A G C G T A G C A T A C G T A C T G A T C G T G C A
p-value:1e-9
log p-value:-2.215e+01
Information Content per bp:1.689
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif7.02%
Number of Background Sequences with motif705.3
Percentage of Background Sequences with motif2.69%
Average Position of motif in Targets49.3 +/- 24.0bp
Average Position of motif in Background50.2 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYB/MA0502.1/Jaspar

Match Rank:1
Score:0.84
Offset:-6
Orientation:forward strand
Alignment:------KCCAATCAGA
AAATGGACCAATCAG-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T A C G T C A C G T A C G A T A G T C C G T A T A C G C G T A
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----KCCAATCAGA
ACTAGCCAATCA--
 A C G T A C G T A C G T A C G T A C G T A T G C G T A C G T C A C G T A C G A T A G T C C G T A T A C G C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-KCCAATCAGA
AGCCAATCGG-
 A C G T A C G T A T G C G T A C G T C A C G T A C G A T A G T C C G T A T A C G C G T A
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

Dux/MA0611.1/Jaspar

Match Rank:4
Score:0.79
Offset:1
Orientation:forward strand
Alignment:KCCAATCAGA
-CCAATCAA-
 A C G T A T G C G T A C G T C A C G T A C G A T A G T C C G T A T A C G C G T A
A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T

NFYA/MA0060.2/Jaspar

Match Rank:5
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---KCCAATCAGA-----
TGGACCAATCAGCACTCT
 A C G T A C G T A C G T A C G T A T G C G T A C G T C A C G T A C G A T A G T C C G T A T A C G C G T A A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

MSX2/MA0708.1/Jaspar

Match Rank:6
Score:0.72
Offset:1
Orientation:forward strand
Alignment:KCCAATCAGA
-CCAATTAA-
 A C G T A T G C G T A C G T C A C G T A C G A T A G T C C G T A T A C G C G T A
A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:7
Score:0.71
Offset:1
Orientation:forward strand
Alignment:KCCAATCAGA-
-CAAATCACTG
 A C G T A T G C G T A C G T C A C G T A C G A T A G T C C G T A T A C G C G T A A C G T
A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

MSX1/MA0666.1/Jaspar

Match Rank:8
Score:0.70
Offset:1
Orientation:forward strand
Alignment:KCCAATCAGA
-CCAATTAG-
 A C G T A T G C G T A C G T C A C G T A C G A T A G T C C G T A T A C G C G T A
A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T

EN1/MA0027.2/Jaspar

Match Rank:9
Score:0.70
Offset:1
Orientation:forward strand
Alignment:KCCAATCAGA
-CTAATTAG-
 A C G T A T G C G T A C G T C A C G T A C G A T A G T C C G T A T A C G C G T A
A C G T A T G C G A C T T G C A G T C A A C G T A G C T C G T A T C A G A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:10
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---KCCAATCAGA
SCTGTCAVTCAV-
 A C G T A C G T A C G T A C G T A T G C G T A C G T C A C G T A C G A T A G T C C G T A T A C G C G T A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T