Information for 3-GCAAMKGAAGARAGGG (Motif 12)

A T C G A T G C G T C A G T C A T G C A C A T G T A C G C G T A C T G A T A C G C T G A C T A G C T G A A C T G A C T G C T A G
Reverse Opposite:
G A T C G T A C A G T C A G C T G A T C A G C T A T G C A G C T C G A T A T G C G T A C A C G T A C G T A C G T A T C G T A G C
p-value:1e-10
log p-value:-2.474e+01
Information Content per bp:1.699
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.53%
Number of Background Sequences with motif24.6
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets42.1 +/- 28.9bp
Average Position of motif in Background51.4 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GCAAMKGAAGARAGGG
-----GGAACAAAGR-
 A T C G A T G C G T C A G T C A T G C A C A T G T A C G C G T A C T G A T A C G C T G A C T A G C T G A A C T G A C T G C T A G
A C G T A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

MF0001.1_ETS_class/Jaspar

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCAAMKGAAGARAGGG
--ACCGGAAG------
 A T C G A T G C G T C A G T C A T G C A C A T G T A C G C G T A C T G A T A C G C T G A C T A G C T G A A C T G A C T G C T A G
A C G T A C G T C T G A T A G C T G A C C A T G C T A G C T G A G C T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCAAMKGAAGARAGGG---
--AGAAGAACAAAGGACTA
 A T C G A T G C G T C A G T C A T G C A C A T G T A C G C G T A C T G A T A C G C T G A C T A G C T G A A C T G A C T G C T A G A C G T A C G T A C G T
A C G T A C G T G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCAAMKGAAGARAGGG---
-GGAAGGAAGGAAGGAAGG
 A T C G A T G C G T C A G T C A T G C A C A T G T A C G C G T A C T G A T A C G C T G A C T A G C T G A A C T G A C T G C T A G A C G T A C G T A C G T
A C G T A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GCAAMKGAAGARAGGG---
--ATAAGAACAAAGGACTA
 A T C G A T G C G T C A G T C A T G C A C A T G T A C G C G T A C T G A T A C G C T G A C T A G C T G A A C T G A C T G C T A G A C G T A C G T A C G T
A C G T A C G T G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0137.1_Irf3_2/Jaspar

Match Rank:6
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GCAAMKGAAGARAGGG----
------GGAGAAAGGTGCGA
 A T C G A T G C G T C A G T C A T G C A C A T G T A C G C G T A C T G A T A C G C T G A C T A G C T G A A C T G A C T G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

Sox3/MA0514.1/Jaspar

Match Rank:7
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GCAAMKGAAGARAGGG
-----AAAACAAAGG-
 A T C G A T G C G T C A G T C A T G C A C A T G T A C G C G T A C T G A T A C G C T G A C T A G C T G A A C T G A C T G C T A G
A C G T A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:GCAAMKGAAGARAGGG
-------AACAAAGG-
 A T C G A T G C G T C A G T C A T G C A C A T G T A C G C G T A C T G A T A C G C T G A C T A G C T G A A C T G A C T G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:GCAAMKGAAGARAGGG
------GAACAATGGN
 A T C G A T G C G T C A G T C A T G C A C A T G T A C G C G T A C T G A T A C G C T G A C T A G C T G A A C T G A C T G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

POL008.1_DCE_S_I/Jaspar

Match Rank:10
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:GCAAMKGAAGARAGGG
-----NGAAGC-----
 A T C G A T G C G T C A G T C A T G C A C A T G T A C G C G T A C T G A T A C G C T G A C T A G C T G A A C T G A C T G C T A G
A C G T A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T