Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 793)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48824)	% of Background Sequences with Motif
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-9	-2.288e+01	0.0000	33.0	4.16%	527.3	1.08%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-8	-1.998e+01	0.0000	25.0	3.15%	355.3	0.73%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-8	-1.910e+01	0.0000	43.0	5.42%	960.3	1.96%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-8	-1.900e+01	0.0000	38.0	4.79%	786.9	1.61%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-7	-1.817e+01	0.0000	47.0	5.92%	1142.4	2.33%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-7	-1.796e+01	0.0000	51.0	6.42%	1305.9	2.67%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-7	-1.795e+01	0.0000	42.0	5.29%	963.2	1.97%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-7	-1.752e+01	0.0000	35.0	4.41%	727.2	1.49%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-7	-1.747e+01	0.0000	46.0	5.79%	1131.9	2.31%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-4	-1.121e+01	0.0005	17.0	2.14%	301.6	0.62%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-4	-1.120e+01	0.0005	14.0	1.76%	211.8	0.43%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-4	-1.102e+01	0.0005	48.0	6.05%	1529.3	3.12%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-4	-1.092e+01	0.0005	47.0	5.92%	1491.5	3.05%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-3	-9.125e+00	0.0028	49.0	6.17%	1701.5	3.48%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-3	-9.115e+00	0.0028	62.0	7.81%	2318.9	4.74%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-3	-8.825e+00	0.0033	50.0	6.30%	1770.7	3.62%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-3	-8.710e+00	0.0035	54.0	6.80%	1968.4	4.02%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-3	-8.678e+00	0.0035	22.0	2.77%	558.2	1.14%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-3	-8.446e+00	0.0041	37.0	4.66%	1201.7	2.45%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-3	-7.881e+00	0.0069	28.0	3.53%	842.0	1.72%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-3	-7.863e+00	0.0069	56.0	7.05%	2137.9	4.37%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-3	-7.605e+00	0.0082	72.0	9.07%	2961.6	6.05%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-3	-7.304e+00	0.0107	204.0	25.69%	10229.4	20.90%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-2	-6.628e+00	0.0201	42.0	5.29%	1568.0	3.20%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-2	-6.378e+00	0.0247	47.0	5.92%	1833.8	3.75%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-2	-6.295e+00	0.0258	98.0	12.34%	4495.2	9.18%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-2	-6.254e+00	0.0259	49.0	6.17%	1944.3	3.97%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-2	-6.078e+00	0.0298	47.0	5.92%	1862.8	3.81%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-2	-5.816e+00	0.0374	50.0	6.30%	2039.7	4.17%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-2	-5.816e+00	0.0374	15.0	1.89%	404.0	0.83%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-2	-5.728e+00	0.0382	90.0	11.34%	4149.4	8.48%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-2	-5.556e+00	0.0440	9.0	1.13%	186.9	0.38%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-2	-5.542e+00	0.0440	123.0	15.49%	5993.9	12.24%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-2	-5.501e+00	0.0440	30.0	3.78%	1087.0	2.22%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-2	-5.459e+00	0.0443	26.0	3.27%	903.1	1.84%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-2	-5.449e+00	0.0443	6.0	0.76%	92.6	0.19%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-5.325e+00	0.0479	33.0	4.16%	1245.7	2.54%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-2	-5.128e+00	0.0568	158.0	19.90%	8054.9	16.45%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-2	-5.061e+00	0.0591	22.0	2.77%	748.0	1.53%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-2	-5.011e+00	0.0606	73.0	9.19%	3342.5	6.83%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-2	-4.963e+00	0.0621	6.0	0.76%	102.7	0.21%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-2	-4.879e+00	0.0659	46.0	5.79%	1939.3	3.96%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-4.619e+00	0.0835	17.0	2.14%	550.4	1.12%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-4.605e+00	0.0835	7.0	0.88%	144.5	0.30%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-4.506e+00	0.0893	18.0	2.27%	602.5	1.23%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-1	-4.133e+00	0.1268	9.0	1.13%	235.8	0.48%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-1	-4.101e+00	0.1282	69.0	8.69%	3269.4	6.68%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-1	-4.079e+00	0.1283	36.0	4.53%	1518.3	3.10%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-1	-4.038e+00	0.1310	66.0	8.31%	3116.7	6.37%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-1	-4.037e+00	0.1310	19.0	2.39%	681.6	1.39%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-3.892e+00	0.1456	17.0	2.14%	598.0	1.22%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-3.859e+00	0.1477	218.0	27.46%	11880.4	24.27%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-3.835e+00	0.1483	30.0	3.78%	1239.2	2.53%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-1	-3.803e+00	0.1503	64.0	8.06%	3046.6	6.22%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-1	-3.773e+00	0.1520	14.0	1.76%	469.0	0.96%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-3.714e+00	0.1585	49.0	6.17%	2249.0	4.59%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1	-3.671e+00	0.1626	31.0	3.90%	1308.1	2.67%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-1	-3.658e+00	0.1626	7.0	0.88%	175.4	0.36%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-3.563e+00	0.1749	2.0	0.25%	16.6	0.03%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-1	-3.538e+00	0.1763	69.0	8.69%	3368.4	6.88%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-1	-3.473e+00	0.1851	25.0	3.15%	1024.6	2.09%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-3.355e+00	0.2050	32.0	4.03%	1397.1	2.85%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-3.292e+00	0.2148	13.0	1.64%	454.8	0.93%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-1	-3.263e+00	0.2176	29.0	3.65%	1252.6	2.56%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-3.235e+00	0.2203	75.0	9.45%	3763.0	7.69%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-3.204e+00	0.2240	84.0	10.58%	4276.8	8.74%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-3.154e+00	0.2319	12.0	1.51%	417.3	0.85%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-3.088e+00	0.2441	22.0	2.77%	912.2	1.86%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-3.084e+00	0.2441	44.0	5.54%	2075.1	4.24%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-3.043e+00	0.2481	55.0	6.93%	2685.7	5.49%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-2.892e+00	0.2843	19.0	2.39%	780.9	1.60%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-2.841e+00	0.2950	29.0	3.65%	1305.5	2.67%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-2.838e+00	0.2950	36.0	4.53%	1680.4	3.43%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-2.789e+00	0.3023	3.0	0.38%	55.9	0.11%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-2.775e+00	0.3025	106.0	13.35%	5642.9	11.53%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1	-2.727e+00	0.3134	175.0	22.04%	9704.6	19.83%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-2.721e+00	0.3134	40.0	5.04%	1916.8	3.92%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-2.670e+00	0.3231	69.0	8.69%	3546.9	7.25%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-2.659e+00	0.3231	67.0	8.44%	3436.0	7.02%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-2.645e+00	0.3231	36.0	4.53%	1710.2	3.49%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-2.592e+00	0.3364	95.0	11.96%	5056.6	10.33%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-2.586e+00	0.3364	3.0	0.38%	60.1	0.12%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-2.569e+00	0.3364	2.0	0.25%	28.7	0.06%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-2.561e+00	0.3364	19.0	2.39%	815.7	1.67%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-1	-2.479e+00	0.3589	27.0	3.40%	1248.9	2.55%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-2.466e+00	0.3593	20.0	2.52%	878.7	1.80%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-2.446e+00	0.3623	55.0	6.93%	2803.9	5.73%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-2.425e+00	0.3660	7.0	0.88%	233.6	0.48%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-2.381e+00	0.3781	11.0	1.39%	427.4	0.87%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-1	-2.368e+00	0.3787	5.0	0.63%	147.1	0.30%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.287e+00	0.4061	71.0	8.94%	3753.6	7.67%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.278e+00	0.4061	17.0	2.14%	743.2	1.52%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.264e+00	0.4069	11.0	1.39%	437.1	0.89%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-2.261e+00	0.4069	30.0	3.78%	1444.2	2.95%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-2.185e+00	0.4311	27.0	3.40%	1293.0	2.64%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-2.174e+00	0.4314	32.0	4.03%	1569.7	3.21%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-2.162e+00	0.4318	71.0	8.94%	3786.8	7.74%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-2.157e+00	0.4318	54.0	6.80%	2811.2	5.74%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-2.144e+00	0.4318	134.0	16.88%	7485.0	15.29%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-2.118e+00	0.4380	30.0	3.78%	1468.7	3.00%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-2.114e+00	0.4380	45.0	5.67%	2309.2	4.72%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.092e+00	0.4405	66.0	8.31%	3516.7	7.18%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-2.090e+00	0.4405	6.0	0.76%	207.7	0.42%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-2.085e+00	0.4405	14.0	1.76%	608.6	1.24%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-2.002e+00	0.4683	31.0	3.90%	1544.6	3.16%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-2.001e+00	0.4683	57.0	7.18%	3021.6	6.17%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.998e+00	0.4683	21.0	2.64%	993.4	2.03%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.993e+00	0.4683	11.0	1.39%	462.0	0.94%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.952e+00	0.4743	45.0	5.67%	2345.1	4.79%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.947e+00	0.4743	45.0	5.67%	2346.9	4.79%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.902e+00	0.4895	94.0	11.84%	5207.8	10.64%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.843e+00	0.5144	14.0	1.76%	636.3	1.30%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.818e+00	0.5231	44.0	5.54%	2319.4	4.74%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.795e+00	0.5303	74.0	9.32%	4067.4	8.31%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.791e+00	0.5303	43.0	5.42%	2268.8	4.63%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.784e+00	0.5303	86.0	10.83%	4776.6	9.76%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.754e+00	0.5385	19.0	2.39%	920.4	1.88%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.746e+00	0.5385	45.0	5.67%	2394.2	4.89%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.745e+00	0.5385	50.0	6.30%	2683.6	5.48%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.694e+00	0.5574	8.0	1.01%	336.3	0.69%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.660e+00	0.5720	1.0	0.13%	13.7	0.03%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.627e+00	0.5862	37.0	4.66%	1962.4	4.01%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.614e+00	0.5890	75.0	9.45%	4185.3	8.55%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.591e+00	0.5983	40.0	5.04%	2144.1	4.38%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.579e+00	0.6005	23.0	2.90%	1173.5	2.40%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.567e+00	0.6028	69.0	8.69%	3847.3	7.86%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.567e+00	0.6028	42.0	5.29%	2266.9	4.63%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.566e+00	0.6028	141.0	17.76%	8140.9	16.63%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.556e+00	0.6028	10.0	1.26%	456.3	0.93%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.546e+00	0.6028	66.0	8.31%	3677.5	7.51%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.478e+00	0.6336	4.0	0.50%	150.6	0.31%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.478e+00	0.6336	18.0	2.27%	909.2	1.86%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.446e+00	0.6444	50.0	6.30%	2767.8	5.65%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.439e+00	0.6444	111.0	13.98%	6397.8	13.07%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.424e+00	0.6490	12.0	1.51%	582.0	1.19%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.408e+00	0.6551	11.0	1.39%	529.1	1.08%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.393e+00	0.6598	26.0	3.27%	1383.0	2.83%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.373e+00	0.6632	1.0	0.13%	18.5	0.04%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.373e+00	0.6632	1.0	0.13%	18.4	0.04%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.341e+00	0.6803	12.0	1.51%	594.8	1.22%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.331e+00	0.6824	27.0	3.40%	1454.5	2.97%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.292e+00	0.7041	30.0	3.78%	1638.9	3.35%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.283e+00	0.7041	1.0	0.13%	20.5	0.04%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.283e+00	0.7041	1.0	0.13%	20.3	0.04%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.283e+00	0.7041	25.0	3.15%	1349.7	2.76%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.262e+00	0.7061	32.0	4.03%	1763.9	3.60%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.249e+00	0.7103	28.0	3.53%	1532.6	3.13%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.194e+00	0.7455	38.0	4.79%	2136.7	4.37%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.161e+00	0.7601	3.0	0.38%	121.6	0.25%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.161e+00	0.7601	3.0	0.38%	121.6	0.25%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.155e+00	0.7601	24.0	3.02%	1321.7	2.70%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.135e+00	0.7696	10.0	1.26%	512.5	1.05%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.124e+00	0.7730	5.0	0.63%	232.6	0.48%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.119e+00	0.7730	115.0	14.48%	6795.4	13.88%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.118e+00	0.7730	25.0	3.15%	1389.4	2.84%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.110e+00	0.7730	25.0	3.15%	1391.1	2.84%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.103e+00	0.7730	42.0	5.29%	2403.6	4.91%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.097e+00	0.7730	81.0	10.20%	4749.6	9.70%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.096e+00	0.7730	71.0	8.94%	4146.5	8.47%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.093e+00	0.7730	3.0	0.38%	126.9	0.26%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.088e+00	0.7730	20.0	2.52%	1102.3	2.25%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.067e+00	0.7730	23.0	2.90%	1284.6	2.62%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.056e+00	0.7768	44.0	5.54%	2539.7	5.19%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.017e+00	0.8028	25.0	3.15%	1416.4	2.89%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-9.963e-01	0.8146	5.0	0.63%	246.7	0.50%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-9.891e-01	0.8155	6.0	0.76%	304.3	0.62%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-9.819e-01	0.8165	3.0	0.38%	135.4	0.28%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-9.622e-01	0.8278	4.0	0.50%	193.1	0.39%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-9.469e-01	0.8356	29.0	3.65%	1676.5	3.42%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-9.447e-01	0.8356	9.0	1.13%	485.7	0.99%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-9.291e-01	0.8406	40.0	5.04%	2345.3	4.79%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-9.270e-01	0.8406	10.0	1.26%	547.1	1.12%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-9.259e-01	0.8406	37.0	4.66%	2165.7	4.42%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-9.119e-01	0.8406	65.0	8.19%	3868.3	7.90%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-9.021e-01	0.8439	13.0	1.64%	730.1	1.49%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-8.888e-01	0.8503	83.0	10.45%	4976.3	10.17%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-8.823e-01	0.8510	9.0	1.13%	496.1	1.01%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-8.724e-01	0.8547	20.0	2.52%	1157.6	2.36%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-8.530e-01	0.8666	14.0	1.76%	801.8	1.64%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-8.485e-01	0.8666	86.0	10.83%	5182.8	10.59%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-8.465e-01	0.8666	6.0	0.76%	324.5	0.66%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-8.464e-01	0.8666	4.0	0.50%	206.7	0.42%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-8.395e-01	0.8666	62.0	7.81%	3721.6	7.60%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-8.311e-01	0.8666	55.0	6.93%	3298.7	6.74%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-8.216e-01	0.8666	2.0	0.25%	92.8	0.19%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-8.189e-01	0.8666	7.0	0.88%	388.6	0.79%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-8.093e-01	0.8666	2.0	0.25%	93.3	0.19%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-8.076e-01	0.8666	6.0	0.76%	330.3	0.67%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-8.072e-01	0.8666	7.0	0.88%	390.7	0.80%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-7.931e-01	0.8668	9.0	1.13%	513.6	1.05%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-7.855e-01	0.8688	3.0	0.38%	154.4	0.32%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-7.726e-01	0.8755	38.0	4.79%	2286.2	4.67%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-7.652e-01	0.8774	8.0	1.01%	458.9	0.94%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-7.486e-01	0.8875	5.0	0.63%	279.7	0.57%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-7.416e-01	0.8892	53.0	6.68%	3220.5	6.58%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-7.398e-01	0.8892	8.0	1.01%	463.4	0.95%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-7.341e-01	0.8892	25.0	3.15%	1505.4	3.08%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.304e-01	0.8892	14.0	1.76%	832.1	1.70%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-7.273e-01	0.8892	81.0	10.20%	4949.3	10.11%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-7.078e-01	0.8967	2.0	0.25%	102.1	0.21%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-6.945e-01	0.9043	24.0	3.02%	1458.1	2.98%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-6.921e-01	0.9043	56.0	7.05%	3431.4	7.01%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-6.743e-01	0.9136	5.0	0.63%	291.2	0.59%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-6.617e-01	0.9207	4.0	0.50%	231.3	0.47%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-6.591e-01	0.9207	165.0	20.78%	10178.6	20.79%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-6.497e-01	0.9227	23.0	2.90%	1413.2	2.89%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.387e-01	0.9284	13.0	1.64%	796.2	1.63%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-6.381e-01	0.9284	178.0	22.42%	11000.9	22.47%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-6.361e-01	0.9284	4.0	0.50%	235.4	0.48%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-6.361e-01	0.9284	4.0	0.50%	235.5	0.48%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-6.228e-01	0.9284	36.0	4.53%	2231.8	4.56%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-6.196e-01	0.9284	20.0	2.52%	1238.8	2.53%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-6.178e-01	0.9284	5.0	0.63%	301.2	0.62%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-6.062e-01	0.9284	9.0	1.13%	555.9	1.14%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-5.859e-01	0.9424	2.0	0.25%	116.0	0.24%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-5.837e-01	0.9424	6.0	0.76%	371.6	0.76%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-5.683e-01	0.9502	7.0	0.88%	438.7	0.90%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-5.614e-01	0.9524	71.0	8.94%	4443.6	9.08%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-5.599e-01	0.9524	7.0	0.88%	440.7	0.90%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-5.452e-01	0.9592	61.0	7.68%	3832.5	7.83%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-5.441e-01	0.9592	29.0	3.65%	1833.2	3.74%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-5.424e-01	0.9592	9.0	1.13%	572.5	1.17%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-5.383e-01	0.9592	1.0	0.13%	54.8	0.11%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-5.381e-01	0.9592	29.0	3.65%	1836.5	3.75%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.269e-01	0.9592	1.0	0.13%	55.7	0.11%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-5.009e-01	0.9760	6.0	0.76%	390.8	0.80%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-5.009e-01	0.9760	53.0	6.68%	3363.1	6.87%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-4.923e-01	0.9760	35.0	4.41%	2238.6	4.57%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-4.896e-01	0.9760	75.0	9.45%	4748.2	9.70%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-4.786e-01	0.9807	3.0	0.38%	197.5	0.40%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-4.782e-01	0.9807	9.0	1.13%	591.8	1.21%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-4.771e-01	0.9807	6.0	0.76%	396.0	0.81%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-4.700e-01	0.9807	11.0	1.39%	724.0	1.48%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-4.692e-01	0.9807	70.0	8.82%	4452.9	9.10%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-4.572e-01	0.9807	3.0	0.38%	201.6	0.41%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-4.550e-01	0.9807	1.0	0.13%	62.8	0.13%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-4.545e-01	0.9807	4.0	0.50%	269.3	0.55%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-4.445e-01	0.9807	55.0	6.93%	3530.5	7.21%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-4.401e-01	0.9807	19.0	2.39%	1251.0	2.56%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-4.326e-01	0.9841	6.0	0.76%	408.7	0.84%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-4.289e-01	0.9841	2.0	0.25%	137.4	0.28%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-4.266e-01	0.9841	13.0	1.64%	869.3	1.78%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-4.173e-01	0.9869	7.0	0.88%	479.4	0.98%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-4.111e-01	0.9890	1.0	0.13%	67.6	0.14%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-4.073e-01	0.9890	5.0	0.63%	348.6	0.71%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-4.029e-01	0.9890	1.0	0.13%	68.2	0.14%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-4.009e-01	0.9890	25.0	3.15%	1656.8	3.38%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-3.909e-01	0.9929	10.0	1.26%	687.8	1.41%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-3.851e-01	0.9947	9.0	1.13%	623.5	1.27%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-3.798e-01	0.9959	4.0	0.50%	287.0	0.59%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-3.743e-01	0.9974	47.0	5.92%	3080.9	6.29%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-3.731e-01	0.9974	2.0	0.25%	147.1	0.30%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-3.675e-01	0.9974	32.0	4.03%	2127.9	4.35%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-3.623e-01	0.9976	77.0	9.70%	4993.0	10.20%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-3.565e-01	0.9994	17.0	2.14%	1163.4	2.38%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-3.560e-01	0.9994	27.0	3.40%	1813.7	3.71%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-3.488e-01	0.9994	8.0	1.01%	570.5	1.17%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.485e-01	0.9994	15.0	1.89%	1036.8	2.12%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-3.399e-01	1.0000	68.0	8.56%	4446.0	9.08%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-3.395e-01	1.0000	12.0	1.51%	842.1	1.72%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-3.305e-01	1.0000	48.0	6.05%	3183.0	6.50%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-3.305e-01	1.0000	13.0	1.64%	913.2	1.87%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-3.279e-01	1.0000	3.0	0.38%	230.3	0.47%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-3.234e-01	1.0000	4.0	0.50%	303.8	0.62%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-3.207e-01	1.0000	15.0	1.89%	1051.5	2.15%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-3.207e-01	1.0000	10.0	1.26%	717.7	1.47%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.178e-01	1.0000	18.0	2.27%	1252.0	2.56%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-3.162e-01	1.0000	28.0	3.53%	1906.5	3.89%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-3.128e-01	1.0000	6.0	0.76%	447.2	0.91%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-3.126e-01	1.0000	1.0	0.13%	81.2	0.17%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-3.123e-01	1.0000	8.0	1.01%	585.8	1.20%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-3.074e-01	1.0000	2.0	0.25%	161.3	0.33%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.965e-01	1.0000	12.0	1.51%	864.5	1.77%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-2.938e-01	1.0000	23.0	2.90%	1596.1	3.26%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-2.895e-01	1.0000	7.0	0.88%	526.2	1.08%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-2.880e-01	1.0000	16.0	2.02%	1137.4	2.32%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-2.864e-01	1.0000	13.0	1.64%	937.5	1.92%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.716e-01	1.0000	2.0	0.25%	170.9	0.35%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-2.699e-01	1.0000	19.0	2.39%	1349.6	2.76%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.689e-01	1.0000	1.0	0.13%	89.6	0.18%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-2.649e-01	1.0000	8.0	1.01%	607.2	1.24%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.607e-01	1.0000	2.0	0.25%	173.0	0.35%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.605e-01	1.0000	5.0	0.63%	397.3	0.81%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.590e-01	1.0000	24.0	3.02%	1689.3	3.45%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.564e-01	1.0000	10.0	1.26%	750.6	1.53%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.414e-01	1.0000	24.0	3.02%	1704.4	3.48%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.406e-01	1.0000	1.0	0.13%	95.7	0.20%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.383e-01	1.0000	16.0	2.02%	1171.7	2.39%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.262e-01	1.0000	34.0	4.28%	2379.5	4.86%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.217e-01	1.0000	3.0	0.38%	264.4	0.54%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-2.133e-01	1.0000	23.0	2.90%	1663.0	3.40%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.102e-01	1.0000	29.0	3.65%	2066.6	4.22%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.984e-01	1.0000	11.0	1.39%	857.4	1.75%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.902e-01	1.0000	13.0	1.64%	1003.1	2.05%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.901e-01	1.0000	4.0	0.50%	355.3	0.73%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.898e-01	1.0000	9.0	1.13%	722.5	1.48%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.860e-01	1.0000	14.0	1.76%	1076.7	2.20%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.765e-01	1.0000	19.0	2.39%	1429.9	2.92%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.758e-01	1.0000	20.0	2.52%	1498.6	3.06%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.741e-01	1.0000	18.0	2.27%	1363.7	2.79%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.739e-01	1.0000	1.0	0.13%	113.5	0.23%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.698e-01	1.0000	19.0	2.39%	1436.3	2.93%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.687e-01	1.0000	45.0	5.67%	3177.1	6.49%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.601e-01	1.0000	8.0	1.01%	672.6	1.37%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.554e-01	1.0000	19.0	2.39%	1452.6	2.97%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.485e-01	1.0000	48.0	6.05%	3409.0	6.96%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.457e-01	1.0000	3.0	0.38%	300.3	0.61%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.423e-01	1.0000	3.0	0.38%	303.0	0.62%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.408e-01	1.0000	1.0	0.13%	125.9	0.26%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.407e-01	1.0000	3.0	0.38%	303.8	0.62%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.383e-01	1.0000	1.0	0.13%	126.2	0.26%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.372e-01	1.0000	2.0	0.25%	220.8	0.45%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.340e-01	1.0000	6.0	0.76%	544.1	1.11%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.338e-01	1.0000	14.0	1.76%	1128.2	2.30%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.303e-01	1.0000	4.0	0.50%	391.8	0.80%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.242e-01	1.0000	95.0	11.96%	6526.5	13.33%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.221e-01	1.0000	3.0	0.38%	315.2	0.64%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.165e-01	1.0000	2.0	0.25%	232.6	0.48%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.125e-01	1.0000	16.0	2.02%	1297.4	2.65%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.124e-01	1.0000	3.0	0.38%	322.3	0.66%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.075e-01	1.0000	4.0	0.50%	409.5	0.84%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.064e-01	1.0000	19.0	2.39%	1518.7	3.10%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.056e-01	1.0000	57.0	7.18%	4093.1	8.36%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.016e-01	1.0000	2.0	0.25%	242.8	0.50%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.010e-01	1.0000	43.0	5.42%	3171.8	6.48%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-9.780e-02	1.0000	21.0	2.64%	1673.6	3.42%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-9.622e-02	1.0000	2.0	0.25%	246.8	0.50%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-9.271e-02	1.0000	6.0	0.76%	584.5	1.19%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-9.185e-02	1.0000	16.0	2.02%	1329.8	2.72%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-8.404e-02	1.0000	1.0	0.13%	155.5	0.32%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-8.044e-02	1.0000	7.0	0.88%	679.0	1.39%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-7.721e-02	1.0000	1.0	0.13%	160.1	0.33%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-7.706e-02	1.0000	13.0	1.64%	1137.1	2.32%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-7.486e-02	1.0000	12.0	1.51%	1067.8	2.18%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-6.644e-02	1.0000	2.0	0.25%	273.7	0.56%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-6.271e-02	1.0000	22.0	2.77%	1820.7	3.72%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-6.099e-02	1.0000	1.0	0.13%	174.5	0.36%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-5.867e-02	1.0000	11.0	1.39%	1024.9	2.09%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-5.572e-02	1.0000	21.0	2.64%	1768.9	3.61%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-5.059e-02	1.0000	8.0	1.01%	809.2	1.65%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-4.575e-02	1.0000	26.0	3.27%	2159.7	4.41%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-4.294e-02	1.0000	1.0	0.13%	195.7	0.40%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-3.960e-02	1.0000	68.0	8.56%	5078.7	10.38%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-3.886e-02	1.0000	1.0	0.13%	201.8	0.41%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.608e-02	1.0000	4.0	0.50%	536.0	1.10%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.541e-02	1.0000	6.0	0.76%	717.0	1.46%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.154e-02	1.0000	6.0	0.76%	732.6	1.50%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.672e-02	1.0000	2.0	0.25%	372.5	0.76%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.641e-02	1.0000	12.0	1.51%	1259.9	2.57%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.601e-02	1.0000	60.0	7.56%	4740.5	9.68%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.309e-02	1.0000	43.0	5.42%	3592.7	7.34%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.212e-02	1.0000	4.0	0.50%	601.5	1.23%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-6.904e-03	1.0000	1.0	0.13%	306.9	0.63%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	27.7	0.06%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	9.6	0.02%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	33.7	0.07%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	0.000e+00	1.0000	0.0	0.00%	142.7	0.29%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	27.6	0.06%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	0.000e+00	1.0000	0.0	0.00%	120.7	0.25%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	80.2	0.16%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	4.5	0.01%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	37.7	0.08%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	52.7	0.11%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	9.8	0.02%