Information for 17-TCCAGACGAA (Motif 49)

C G A T A G T C A T G C C T G A C A T G T G C A G T A C A C T G C T G A T C G A
Reverse Opposite:
A G C T G A C T T A G C A C T G A C G T G T A C G A C T A T C G C T A G C G T A
p-value:1e-6
log p-value:-1.417e+01
Information Content per bp:1.722
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.38%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.3 +/- 25.0bp
Average Position of motif in Background92.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TCCAGACGAA
-CCAGACAG-
 C G A T A G T C A T G C C T G A C A T G T G C A G T A C A C T G C T G A T C G A
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TCCAGACGAA-
-CCAGACRSVB
 C G A T A G T C A T G C C T G A C A T G T G C A G T A C A C T G C T G A T C G A A C G T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----TCCAGACGAA---
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T C G A T A G T C A T G C C T G A C A T G T G C A G T A C A C T G C T G A T C G A A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TCCAGACGAA
ATGCCAGACN--
 A C G T A C G T C G A T A G T C A T G C C T G A C A T G T G C A G T A C A C T G C T G A T C G A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TCCAGACGAA
-BCAGACWA-
 C G A T A G T C A T G C C T G A C A T G T G C A G T A C A C T G C T G A T C G A
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TCCAGACGAA
TGTCTAGACG--
 A C G T A C G T C G A T A G T C A T G C C T G A C A T G T G C A G T A C A C T G C T G A T C G A
C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T A C G T

PB0106.1_Arid5a_2/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TCCAGACGAA----
CATACAATACGAAATAA
 A C G T A C G T A C G T C G A T A G T C A T G C C T G A C A T G T G C A G T A C A C T G C T G A T C G A A C G T A C G T A C G T A C G T
A T G C C T A G G A C T C G T A T G A C C G T A T G C A A C G T T G C A T A G C T A C G C T G A C T G A C G T A A G C T T C G A T C G A

PB0044.1_Mtf1_1/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TCCAGACGAA--
NNTTTGCACACGGCCC
 A C G T A C G T A C G T A C G T C G A T A G T C A T G C C T G A C A T G T G C A G T A C A C T G C T G A T C G A A C G T A C G T
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

E2F8/MA0865.1/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TCCAGACGAA
TTTCCCGCCAAA
 A C G T A C G T C G A T A G T C A T G C C T G A C A T G T G C A G T A C A C T G C T G A T C G A
G A C T A G C T A C G T A G T C A G T C A T G C T A C G A G T C T A G C C T G A C G T A G C T A

STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TCCAGACGAA--
TTCTNNAGAANT
 C G A T A G T C A T G C C T G A C A T G T G C A G T A C A C T G C T G A T C G A A C G T A C G T
A C G T A C G T A G T C G A C T A G C T C T G A C T G A C T A G C G T A C G T A T C G A G A C T