Information for 18-AGGCMWAMAAAKG (Motif 40)

C G T A A C T G A C T G A G T C G T C A G C A T G T C A G T C A C G T A C G T A C G T A A C G T A C T G
Reverse Opposite:
A G T C G T C A A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G G T A C A G T C A C G T
p-value:1e-7
log p-value:-1.827e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif9.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets56.2 +/- 24.9bp
Average Position of motif in Background48.0 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AGGCMWAMAAAKG
---AAAACAAAGG
 C G T A A C T G A C T G A G T C G T C A G C A T G T C A G T C A C G T A C G T A C G T A A C G T A C T G
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:AGGCMWAMAAAKG
-----RACAAWGG
 C G T A A C T G A C T G A G T C G T C A G C A T G T C A G T C A C G T A C G T A C G T A A C G T A C T G
A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:AGGCMWAMAAAKG
-----AACAAAGG
 C G T A A C T G A C T G A G T C G T C A G C A T G T C A G T C A C G T A C G T A C G T A A C G T A C T G
A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGGCMWAMAAAKG-
CGAAGCACACAAAATA
 A C G T A C G T C G T A A C T G A C T G A G T C G T C A G C A T G T C A G T C A C G T A C G T A C G T A A C G T A C T G A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0071.1_Sox4_1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGGCMWAMAAAKG----
AGAAGAACAAAGGACTA
 C G T A A C T G A C T G A G T C G T C A G C A T G T C A G T C A C G T A C G T A C G T A A C G T A C T G A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGGCMWAMAAAKG
AGGCCTNG-----
 C G T A A C T G A C T G A G T C G T C A G C A T G T C A G T C A C G T A C G T A C G T A A C G T A C T G
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGGCMWAMAAAKG
ATTTGCATACAATGG
 A C G T A C G T C G T A A C T G A C T G A G T C G T C A G C A T G T C A G T C A C G T A C G T A C G T A A C G T A C T G
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PB0166.1_Sox12_2/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGGCMWAMAAAKG---
AAACAGACAAAGGAAT
 C G T A A C T G A C T G A G T C G T C A G C A T G T C A G T C A C G T A C G T A C G T A A C G T A C T G A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGGCMWAMAAAKG-
AGAGCCATAAAATTCG
 A C G T A C G T C G T A A C T G A C T G A G T C G T C A G C A T G T C A G T C A C G T A C G T A C G T A A C G T A C T G A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

FOXP1/MA0481.1/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AGGCMWAMAAAKG
CAAAAGTAAACAAAG-
 A C G T A C G T A C G T C G T A A C T G A C T G A G T C G T C A G C A T G T C A G T C A C G T A C G T A C G T A A C G T A C T G
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G A C G T