Information for 9-TGGTTAATAANCC (Motif 20)

A C G T A C T G C T A G C A G T C G A T C G T A C G T A C A G T T C G A C G T A G T A C A G T C G T A C
Reverse Opposite:
C A T G C T A G A C T G G A C T A G C T G T C A A C G T C G A T G C T A G C T A A G T C G T A C G T C A
p-value:1e-9
log p-value:-2.225e+01
Information Content per bp:1.709
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.51%
Number of Background Sequences with motif55.3
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets50.8 +/- 29.2bp
Average Position of motif in Background50.4 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EVX1/MA0887.1/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TGGTTAATAANCC
--GNTAATTANN-
 A C G T A C T G C T A G C A G T C G A T C G T A C G T A C A G T T C G A C G T A G T A C A G T C G T A C
A C G T A C G T A T C G T A G C G A C T C T G A T G C A A G C T A G C T C T G A A T G C A G T C A C G T

EVX2/MA0888.1/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TGGTTAATAANCC
--NNTAATTANN-
 A C G T A C T G C T A G C A G T C G A T C G T A C G T A C A G T T C G A C G T A G T A C A G T C G T A C
A C G T A C G T T A C G A T G C G A C T T C G A T G C A A G C T A C G T C T G A A T G C A T G C A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TGGTTAATAANCC
---TTAATTAN--
 A C G T A C T G C T A G C A G T C G A T C G T A C G T A C A G T T C G A C G T A G T A C A G T C G T A C
A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TGGTTAATAANCC
--GKTAATGR---
 A C G T A C T G C T A G C A G T C G A T C G T A C G T A C A G T T C G A C G T A G T A C A G T C G T A C
A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TGGTTAATAANCC
TGATTRATGGCY-
 A C G T A C T G C T A G C A G T C G A T C G T A C G T A C A G T T C G A C G T A G T A C A G T C G T A C
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C A C G T

EMX1/MA0612.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TGGTTAATAANCC
--CCTAATTACC-
 A C G T A C T G C T A G C A G T C G A T C G T A C G T A C A G T T C G A C G T A G T A C A G T C G T A C
A C G T A C G T T G A C A G T C G A C T T C G A C G T A C G A T C A G T C T G A T A G C A G T C A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGGTTAATAANCC--
NNAATTAATGACCNNN
 A C G T A C G T A C T G C T A G C A G T C G A T C G T A C G T A C A G T T C G A C G T A G T A C A G T C G T A C A C G T A C G T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

PH0174.1_Vax1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGGTTAATAANCC-
CTNNGNTAATTAACNT
 A C G T A C G T A C G T A C T G C T A G C A G T C G A T C G T A C G T A C A G T T C G A C G T A G T A C A G T C G T A C A C G T
G A T C G C A T C T A G C T A G T C A G A G C T G A C T G T C A G C T A C G A T C A G T C T G A C G T A A G T C A T C G A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TGGTTAATAANCC
---TTAATTAN--
 A C G T A C T G C T A G C A G T C G A T C G T A C G T A C A G T T C G A C G T A G T A C A G T C G T A C
A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G A C G T A C G T

MEOX1/MA0661.1/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TGGTTAATAANCC
--GNTAATTAGN-
 A C G T A C T G C T A G C A G T C G A T C G T A C G T A C A G T T C G A C G T A G T A C A G T C G T A C
A C G T A C G T A T C G C A G T G A C T T G C A C T G A G C A T A C G T C T G A A T C G A G T C A C G T