Information for 4-CACGAATTSMMTA (Motif 6)

A G T C C G T A A T G C A C T G C G T A C G T A A C G T C G A T T A C G G T A C G T A C C G A T C G T A
Reverse Opposite:
C G A T C G T A A C T G A C T G A T G C C G T A G T C A A C G T A C G T T G A C A T C G A C G T C T A G
p-value:1e-13
log p-value:-3.113e+01
Information Content per bp:1.746
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.2 +/- 21.1bp
Average Position of motif in Background37.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0008.1_Barx2/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CACGAATTSMMTA
NANAANTAATTANTTA
 A C G T A C G T A C G T A G T C C G T A A T G C A C T G C G T A C G T A A C G T C G A T T A C G G T A C G T A C C G A T C G T A
G A C T C T G A G A C T G T C A T C G A A G T C G A C T G T C A G C T A C A G T C A G T C T G A T G A C A G C T C G A T C G T A

PB0068.1_Sox1_1/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CACGAATTSMMTA---
AATCAATTCAATAATT
 A G T C C G T A A T G C A C T G C G T A C G T A A C G T C G A T T A C G G T A C G T A C C G A T C G T A A C G T A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CACGAATTSMMTA
CACTAATT-----
 A G T C C G T A A T G C A C T G C G T A C G T A A C G T C G A T T A C G G T A C G T A C C G A T C G T A
G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0007.1_Barx1/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CACGAATTSMMTA
ATNNACTAATTACTTT
 A C G T A C G T A C G T A G T C C G T A A T G C A C T G C G T A C G T A A C G T C G A T T A C G G T A C G T A C C G A T C G T A
C G T A G C A T C A G T G A T C T C G A T A G C G A C T T G C A G T C A A C G T A C G T C T G A A T G C A G C T C A G T C A G T

PH0154.1_Prrx1/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CACGAATTSMMTA--
GTAACTAATTAACTACT
 A C G T A C G T A G T C C G T A A T G C A C T G C G T A C G T A A C G T C G A T T A C G G T A C G T A C C G A T C G T A A C G T A C G T
T A C G A C G T G T C A T C G A A G T C G A C T T C G A C T G A A G C T A G C T C T G A T C G A A G T C C A G T C T G A T A G C A G C T

PH0106.1_Msx1/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CACGAATTSMMTA
TGCAACTAATTAATTC
 A C G T A C G T A C G T A G T C C G T A A T G C A C T G C G T A C G T A A C G T C G A T T A C G G T A C G T A C C G A T C G T A
A C G T T C A G G T A C G C T A C T G A G A T C G A C T G T C A C G T A C G A T C G A T C T G A C T G A A C G T G C A T G T A C

PH0147.1_Pou3f2/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CACGAATTSMMTA--
NNNACTAATTAATTANC
 A C G T A C G T A G T C C G T A A T G C A C T G C G T A C G T A A C G T C G A T T A C G G T A C G T A C C G A T C G T A A C G T A C G T
G A T C C T G A G T C A T G C A G A T C C A G T G T C A C G T A C G A T C A G T C T G A C T G A C A G T G C A T G C T A G C A T A T G C

LHX2/MA0700.1/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CACGAATTSMMTA
-ACTAATTAAC--
 A G T C C G T A A T G C A C T G C G T A C G T A A C G T C G A T T A C G G T A C G T A C C G A T C G T A
A C G T T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C A C G T A C G T

PAX4/MA0068.2/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CACGAATTSMMTA
--CTAATTAG---
 A G T C C G T A A T G C A C T G C G T A C G T A A C G T C G A T T A C G G T A C G T A C C G A T C G T A
A C G T A C G T A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G A C G T A C G T A C G T

PB0136.1_IRC900814_2/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CACGAATTSMMTA
TTTTACGACTTTCCAT
 A C G T A C G T A C G T A G T C C G T A A T G C A C T G C G T A C G T A A C G T C G A T T A C G G T A C G T A C C G A T C G T A
C G A T A G C T G C A T A G C T T C G A G A T C C T A G C T G A G T A C C A G T A G C T G A C T G A T C T G A C T C G A G A C T