Information for 2-TGATTTATGG (Motif 3)

C G A T A C T G T G C A A G C T A C G T C G A T T C G A A G C T C T A G C A T G
Reverse Opposite:
G T A C G A T C T C G A A G C T G C T A T G C A C T G A A C G T T G A C G C T A
p-value:1e-14
log p-value:-3.360e+01
Information Content per bp:1.666
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif5.68%
Number of Background Sequences with motif665.1
Percentage of Background Sequences with motif1.38%
Average Position of motif in Targets43.8 +/- 24.8bp
Average Position of motif in Background51.1 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:TGATTTATGG-
TGATTTATGGC
 C G A T A C T G T G C A A G C T A C G T C G A T T C G A A G C T C T A G C A T G A C G T
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:TGATTTATGG--
TGATTTATGGCC
 C G A T A C T G T G C A A G C T A C G T C G A T T C G A A G C T C T A G C A T G A C G T A C G T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxc9/MA0485.1/Jaspar

Match Rank:3
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-TGATTTATGG--
NTGATTTATGGCC
 A C G T C G A T A C T G T G C A A G C T A C G T C G A T T C G A A G C T C T A G C A T G A C G T A C G T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:TGATTTATGG--
TGATTTATGGCC
 C G A T A C T G T G C A A G C T A C G T C G A T T C G A A G C T C T A G C A T G A C G T A C G T
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:TGATTTATGG
TGATTGATGA
 C G A T A C T G T G C A A G C T A C G T C G A T T C G A A G C T C T A G C A T G
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:TGATTTATGG--
DGWTTTATGRCN
 C G A T A C T G T G C A A G C T A C G T C G A T T C G A A G C T C T A G C A T G A C G T A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.82
Offset:0
Orientation:forward strand
Alignment:TGATTTATGG--
TGATTRATGGCY
 C G A T A C T G T G C A A G C T A C G T C G A T T C G A A G C T C T A G C A T G A C G T A C G T
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-TGATTTATGG-
ATGATKGATGRC
 A C G T C G A T A C T G T G C A A G C T A C G T C G A T T C G A A G C T C T A G C A T G A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

PBX1/MA0070.1/Jaspar

Match Rank:9
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--TGATTTATGG
TTTGATTGATGN
 A C G T A C G T C G A T A C T G T G C A A G C T A C G T C G A T T C G A A G C T C T A G C A T G
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:TGATTTATGG-
--TTTTATTGC
 C G A T A C T G T G C A A G C T A C G T C G A T T C G A A G C T C T A G C A T G A C G T
A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C