Information for 9-GTGAGTGTTC (Motif 20)

A C T G A C G T C T A G C G T A A C T G A G C T C T A G A C G T A C G T A G T C
Reverse Opposite:
A C T G C G T A C G T A A G T C C T G A A G T C A C G T A G T C C G T A A G T C
p-value:1e-7
log p-value:-1.798e+01
Information Content per bp:1.922
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif16.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets61.3 +/- 22.5bp
Average Position of motif in Background47.7 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GTGAGTGTTC
TTAAGTGCTT
 A C T G A C G T C T A G C G T A A C T G A G C T C T A G A C G T A C G T A G T C
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GTGAGTGTTC-
CGTGGGTGGTCC
 A C G T A C T G A C G T C T A G C G T A A C T G A G C T C T A G A C G T A C G T A G T C A C G T
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GTGAGTGTTC
CAGGTAAGTAT--
 A C G T A C G T A C G T A C T G A C G T C T A G C G T A A C T G A G C T C T A G A C G T A C G T A G T C
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GTGAGTGTTC
TTGAGTGSTT
 A C T G A C G T C T A G C G T A A C T G A G C T C T A G A C G T A C G T A G T C
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTGAGTGTTC
CTTGAGTGGCT
 A C G T A C T G A C G T C T A G C G T A A C T G A G C T C T A G A C G T A C G T A G T C
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GTGAGTGTTC
TTRAGTGSYK
 A C T G A C G T C T A G C G T A A C T G A G C T C T A G A C G T A C G T A G T C
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTGAGTGTTC-
RGTTAGTGCCCY
 A C G T A C T G A C G T C T A G C G T A A C T G A G C T C T A G A C G T A C G T A G T C A C G T
C T G A C T A G A C G T G A C T G T C A A C T G A G C T A C T G A T G C G T A C G T A C A G C T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GTGAGTGTTC----
----CTGTTCCTGG
 A C T G A C G T C T A G C G T A A C T G A G C T C T A G A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

Nkx3-1/MA0124.2/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GTGAGTGTTC
TTAAGTGGT-
 A C T G A C G T C T A G C G T A A C T G A G C T C T A G A C G T A C G T A G T C
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GTGAGTGTTC-----
-TAATTGTTCTAAAC
 A C T G A C G T C T A G C G T A A C T G A G C T C T A G A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C