Information for 18-TAAAAAGCSTCATAAA (Motif 32)

G C A T G T C A C G T A C T G A C T G A C G T A A C T G T A G C A T G C C A G T A G T C G C T A G C A T G T C A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T C G T A C A G T C T A G G T C A A T C G A C T G G T A C A C G T A G C T A G C T A C G T A C G T C G T A
p-value:1e-8
log p-value:-1.970e+01
Information Content per bp:1.762
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.5 +/- 10.5bp
Average Position of motif in Background38.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:1
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TAAAAAGCSTCATAAA-------
---GAAGTANCACGAATNMRAGT
 G C A T G T C A C G T A C T G A C T G A C G T A A C T G T A G C A T G C C A G T A G T C G C T A G C A T G T C A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:2
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------TAAAAAGCSTCATAAA
TACTGGAAAAAAAA--------
 A C G T A C G T A C G T A C G T A C G T A C G T G C A T G T C A C G T A C T G A C T G A C G T A A C T G T A G C A T G C C A G T A G T C G C T A G C A T G T C A C G T A C G T A
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:3
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TAAAAAGCSTCATAAA
-ACAAAGGNBCCT---
 G C A T G T C A C G T A C T G A C T G A C G T A A C T G T A G C A T G C C A G T A G T C G C T A G C A T G T C A C G T A C G T A
A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----TAAAAAGCSTCATAAA
CCAATAAAAA----------
 A C G T A C G T A C G T A C G T G C A T G T C A C G T A C T G A C T G A C G T A A C T G T A G C A T G C C A G T A G T C G C T A G C A T G T C A C G T A C G T A
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:5
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---TAAAAAGCSTCATAAA
GTATAAAAGGCGGGG----
 A C G T A C G T A C G T G C A T G T C A C G T A C T G A C T G A C G T A A C T G T A G C A T G C C A G T A G T C G C T A G C A T G T C A C G T A C G T A
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G A C G T A C G T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:6
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---TAAAAAGCSTCATAAA
GTATAAAAGGCGGGG----
 A C G T A C G T A C G T G C A T G T C A C G T A C T G A C T G A C G T A A C T G T A G C A T G C C A G T A G T C G C T A G C A T G T C A C G T A C G T A
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G A C G T A C G T A C G T A C G T

FOXL1/MA0033.2/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-TAAAAAGCSTCATAAA
GTAAACA----------
 A C G T G C A T G T C A C G T A C T G A C T G A C G T A A C T G T A G C A T G C C A G T A G T C G C T A G C A T G T C A C G T A C G T A
C T A G G A C T T G C A G T C A T G C A A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer

Match Rank:8
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-TAAAAAGCSTCATAAA
GTAAACAG---------
 A C G T G C A T G T C A C G T A C T G A C T G A C G T A A C T G T A G C A T G C C A G T A G T C G C T A G C A T G T C A C G T A C G T A
C T A G C A G T G T C A C G T A C T G A A G T C C G T A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----TAAAAAGCSTCATAAA
CCAATAAAAA----------
 A C G T A C G T A C G T A C G T G C A T G T C A C G T A C T G A C T G A C G T A A C T G T A G C A T G C C A G T A G T C G C T A G C A T G T C A C G T A C G T A
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----TAAAAAGCSTCATAAA
NCYAATAAAA-----------
 A C G T A C G T A C G T A C G T A C G T G C A T G T C A C G T A C T G A C T G A C G T A A C T G T A G C A T G C C A G T A G T C G C T A G C A T G T C A C G T A C G T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T