Information for 2-GCCVCCAGGGGGCGCC (Motif 3)

C T A G A T G C A G T C T G C A A T G C A G T C T G C A A T C G T A C G T A C G A C T G A T C G T A G C T C A G A T G C T A G C
Reverse Opposite:
A T C G A T C G A G T C A T C G A T G C A G T C A T G C A T G C A T G C A C G T A C T G A T C G A C G T C T A G T A C G A G T C
p-value:1e-16
log p-value:-3.715e+01
Information Content per bp:1.700
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.95%
Number of Background Sequences with motif128.2
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets40.0 +/- 23.2bp
Average Position of motif in Background46.8 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:GCCVCCAGGGGGCGCC----
GCCASCAGGGGGCGCYVNNG
 C T A G A T G C A G T C T G C A A T G C A G T C T G C A A T C G T A C G T A C G A C T G A T C G T A G C T C A G A T G C T A G C A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--GCCVCCAGGGGGCGCC-
TGGCCACCAGGGGGCGCTA
 A C G T A C G T C T A G A T G C A G T C T G C A A T G C A G T C T G C A A T C G T A C G T A C G A C T G A T C G T A G C T C A G A T G C T A G C A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--GCCVCCAGGGGGCGCC--
TGGCCACCAGGTGGCACTNT
 A C G T A C G T C T A G A T G C A G T C T G C A A T G C A G T C T G C A A T C G T A C G T A C G A C T G A T C G T A G C T C A G A T G C T A G C A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GCCVCCAGGGGGCGCC
NCCCCCCCGGGGGGN--
 A C G T C T A G A T G C A G T C T G C A A T G C A G T C T G C A A T C G T A C G T A C G A C T G A T C G T A G C T C A G A T G C T A G C
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G A C G T A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GCCVCCAGGGGGCGCC
CCCCCCCGGGGGNN--
 C T A G A T G C A G T C T G C A A T G C A G T C T G C A A T C G T A C G T A C G A C T G A T C G T A G C T C A G A T G C T A G C
T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G A C G T A C G T

PB0102.1_Zic2_1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCCVCCAGGGGGCGCC
ACCCCCCCGGGGGGN--
 A C G T C T A G A T G C A G T C T G C A A T G C A G T C T G C A A T C G T A C G T A C G A C T G A T C G T A G C T C A G A T G C T A G C
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:7
Score:0.62
Offset:5
Orientation:forward strand
Alignment:GCCVCCAGGGGGCGCC-----
-----TTGGGGGCGCCCCTAG
 C T A G A T G C A G T C T G C A A T G C A G T C T G C A A T C G T A C G T A C G A C T G A T C G T A G C T C A G A T G C T A G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

INSM1/MA0155.1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GCCVCCAGGGGGCGCC
--TGTCAGGGGGCG--
 C T A G A T G C A G T C T G C A A T G C A G T C T G C A A T C G T A C G T A C G A C T G A T C G T A G C T C A G A T G C T A G C
A C G T A C G T C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G A C G T A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCCVCCAGGGGGCGCC
--TGCCCNGGGGCA--
 C T A G A T G C A G T C T G C A A T G C A G T C T G C A A T C G T A C G T A C G A C T G A T C G T A G C T C A G A T G C T A G C
A C G T A C G T G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A A C G T A C G T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCCVCCAGGGGGCGCC
GTCCCCAGGGGA----
 C T A G A T G C A G T C T G C A A T G C A G T C T G C A A T C G T A C G T A C G A C T G A T C G T A G C T C A G A T G C T A G C
C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A A C G T A C G T A C G T A C G T