Information for 1-RATGAGTCAT (Motif 1)

T C A G T G C A A C G T A C T G C G T A A T C G A C G T A G T C C G T A A C G T
Reverse Opposite:
T G C A A C G T A C T G C G T A A T G C A C G T G T A C C G T A A C G T A G T C
p-value:1e-29
log p-value:-6.711e+01
Information Content per bp:1.780
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif7.32%
Number of Background Sequences with motif497.8
Percentage of Background Sequences with motif1.03%
Average Position of motif in Targets54.9 +/- 26.5bp
Average Position of motif in Background52.1 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.99
Offset:0
Orientation:reverse strand
Alignment:RATGAGTCAT
GATGAGTCAT
 T C A G T G C A A C G T A C T G C G T A A T C G A C G T A G T C C G T A A C G T
T A C G T G C A C G A T C A T G C G T A A T C G C G A T G T A C C G T A A G C T

Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer

Match Rank:2
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:RATGAGTCAT--
GATGAGTCATCC
 T C A G T G C A A C G T A C T G C G T A A T C G A C G T A G T C C G T A A C G T A C G T A C G T
C T A G T C G A G A C T A C T G C G T A A T C G C G A T T G A C C G T A A G C T G A T C G T A C

JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer

Match Rank:3
Score:0.97
Offset:0
Orientation:forward strand
Alignment:RATGAGTCAT
RATGASTCAT
 T C A G T G C A A C G T A C T G C G T A A T C G A C G T A G T C C G T A A C G T
C T A G T C G A G C A T C A T G G C T A T A G C C G A T G T A C C T G A A G C T

Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.97
Offset:-1
Orientation:reverse strand
Alignment:-RATGAGTCAT-
NNATGAGTCATN
 A C G T T C A G T G C A A C G T A C T G C G T A A T C G A C G T A G T C C G T A A C G T A C G T
C A T G C T A G T C G A A C G T A C T G C G T A A T C G A C G T G T A C C G T A A G C T G A T C

BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer

Match Rank:5
Score:0.97
Offset:0
Orientation:forward strand
Alignment:RATGAGTCAT
DATGASTCAT
 T C A G T G C A A C G T A C T G C G T A A T C G A C G T A G T C C G T A A C G T
C A G T T G C A A C G T A C T G C G T A A T C G C G A T T G A C C G T A A C G T

Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer

Match Rank:6
Score:0.97
Offset:-1
Orientation:reverse strand
Alignment:-RATGAGTCAT-
NDATGASTCATH
 A C G T T C A G T G C A A C G T A C T G C G T A A T C G A C G T A G T C C G T A A C G T A C G T
C A T G C T A G T C G A A C G T A C T G C G T A T A C G A C G T G T A C C G T A A G C T G A T C

Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer

Match Rank:7
Score:0.97
Offset:0
Orientation:forward strand
Alignment:RATGAGTCAT--
NATGASTCABNN
 T C A G T G C A A C G T A C T G C G T A A T C G A C G T A G T C C G T A A C G T A C G T A C G T
C T A G T C G A C G A T A C T G C G T A T A C G A G C T T G A C G C T A A C G T G A T C T A G C

Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer

Match Rank:8
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-RATGAGTCAT-
NNATGASTCATH
 A C G T T C A G T G C A A C G T A C T G C G T A A T C G A C G T A G T C C G T A A C G T A C G T
A C T G C T A G T C G A C G A T C A T G G C T A A T C G C G A T G T A C G C T A A G C T G T A C

JUND/MA0491.1/Jaspar

Match Rank:9
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:RATGAGTCAT-
NATGAGTCACN
 T C A G T G C A A C G T A C T G C G T A A T C G A C G T A G T C C G T A A C G T A C G T
A T C G T C G A A C G T A C T G C G T A T A C G A C G T A G T C C G T A A G T C G A T C

JUNB/MA0490.1/Jaspar

Match Rank:10
Score:0.96
Offset:1
Orientation:reverse strand
Alignment:RATGAGTCAT--
-ATGAGTCATCN
 T C A G T G C A A C G T A C T G C G T A A T C G A C G T A G T C C G T A A C G T A C G T A C G T
A C G T T G C A A C G T A C T G C G T A T A C G A C G T A G T C C G T A A G C T G A T C G T A C