Information for 2-CCTGCTAATC (Motif 6)

A T G C A G T C G C A T A C T G T G A C A G C T G C T A G T C A A C G T A G T C
Reverse Opposite:
T C A G T G C A A C G T C G A T T C G A A C T G T G A C C G T A T A C G T A C G
p-value:1e-13
log p-value:-3.108e+01
Information Content per bp:1.678
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif5.86%
Number of Background Sequences with motif641.0
Percentage of Background Sequences with motif1.35%
Average Position of motif in Targets49.1 +/- 28.4bp
Average Position of motif in Background48.8 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.73
Offset:3
Orientation:forward strand
Alignment:CCTGCTAATC-
---GCTAATCC
 A T G C A G T C G C A T A C T G T G A C A G C T G C T A G T C A A C G T A G T C A C G T
A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C

GSC/MA0648.1/Jaspar

Match Rank:2
Score:0.71
Offset:3
Orientation:forward strand
Alignment:CCTGCTAATC---
---GCTAATCCCC
 A T G C A G T C G C A T A C T G T G A C A G C T G C T A G T C A A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

PH0139.1_Pitx3/Jaspar

Match Rank:3
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CCTGCTAATC-----
GNNAGCTAATCCCCCN
 A C G T A T G C A G T C G C A T A C T G T G A C A G C T G C T A G T C A A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:4
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:CCTGCTAATC--
----YTAATCCY
 A T G C A G T C G C A T A C T G T G A C A G C T G C T A G T C A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

GSC2/MA0891.1/Jaspar

Match Rank:5
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CCTGCTAATC---
---CCTAATCCGC
 A T G C A G T C G C A T A C T G T G A C A G C T G C T A G T C A A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CCTGCTAATC---
---NYTAATCCYB
 A T G C A G T C G C A T A C T G T G A C A G C T G C T A G T C A A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

OTX1/MA0711.1/Jaspar

Match Rank:7
Score:0.67
Offset:4
Orientation:forward strand
Alignment:CCTGCTAATC--
----TTAATCCG
 A T G C A G T C G C A T A C T G T G A C A G C T G C T A G T C A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G

OTX2/MA0712.1/Jaspar

Match Rank:8
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CCTGCTAATC--
----TTAATCCT
 A T G C A G T C G C A T A C T G T G A C A G C T G C T A G T C A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

PITX3/MA0714.1/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CCTGCTAATC--
---CTTAATCCC
 A T G C A G T C G C A T A C T G T G A C A G C T G C T A G T C A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

Pitx1/MA0682.1/Jaspar

Match Rank:10
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CCTGCTAATC--
----TTAATCCC
 A T G C A G T C G C A T A C T G T G A C A G C T G C T A G T C A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C