Information for 3-CAATDAAAGTTTAWTG (Motif 5)

A G T C G T C A C G T A G A C T C G T A C G T A C G T A C G T A A C T G C G A T A C G T A C G T C G T A C G A T C G A T C A T G
Reverse Opposite:
G T A C C G T A G C T A C G A T T G C A C G T A C G T A T G A C G C A T C G A T C G A T G A C T C G T A C G A T C A G T A C T G
p-value:1e-13
log p-value:-3.136e+01
Information Content per bp:1.695
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.46%
Number of Background Sequences with motif15.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets51.3 +/- 20.8bp
Average Position of motif in Background53.6 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0075.1_Hoxd10/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CAATDAAAGTTTAWTG
AATGCAATAAAATTTAT---
 A C G T A C G T A C G T A C G T A G T C G T C A C G T A G A C T C G T A C G T A C G T A C G T A A C T G C G A T A C G T A C G T C G T A C G A T C G A T C A T G
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CAATDAAAGTTTAWTG
CTACCAATAAAATTCT----
 A C G T A C G T A C G T A C G T A G T C G T C A C G T A G A C T C G T A C G T A C G T A C G T A A C T G C G A T A C G T A C G T C G T A C G A T C G A T C A T G
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T A C G T A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CAATDAAAGTTTAWTG
AACCCAATAAAATTCG----
 A C G T A C G T A C G T A C G T A G T C G T C A C G T A G A C T C G T A C G T A C G T A C G T A A C T G C G A T A C G T A C G T C G T A C G A T C G A T C A T G
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G A C G T A C G T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAATDAAAGTTTAWTG
NGCAATTAAA--------
 A C G T A C G T A G T C G T C A C G T A G A C T C G T A C G T A C G T A C G T A A C T G C G A T A C G T A C G T C G T A C G A T C G A T C A T G
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CAATDAAAGTTTAWTG
CCAATAAAAC-------
 A C G T A G T C G T C A C G T A G A C T C G T A C G T A C G T A C G T A A C T G C G A T A C G T A C G T C G T A C G A T C G A T C A T G
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CAATDAAAGTTTAWTG
GCAATAAAAA-------
 A C G T A G T C G T C A C G T A G A C T C G T A C G T A C G T A C G T A A C T G C G A T A C G T A C G T C G T A C G A T C G A T C A T G
T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAATDAAAGTTTAWTG
CCAATAAAAA-------
 A C G T A G T C G T C A C G T A G A C T C G T A C G T A C G T A C G T A A C T G C G A T A C G T A C G T C G T A C G A T C G A T C A T G
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAATDAAAGTTTAWTG
CCAATAAAAA-------
 A C G T A G T C G T C A C G T A G A C T C G T A C G T A C G T A C G T A A C T G C G A T A C G T A C G T C G T A C G A T C G A T C A T G
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAATDAAAGTTTAWTG
GCAATAAAA--------
 A C G T A G T C G T C A C G T A G A C T C G T A C G T A C G T A C G T A A C T G C G A T A C G T A C G T C G T A C G A T C G A T C A T G
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAATDAAAGTTTAWTG
NCYAATAAAA--------
 A C G T A C G T A G T C G T C A C G T A G A C T C G T A C G T A C G T A C G T A A C T G C G A T A C G T A C G T C G T A C G A T C G A T C A T G
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T