Information for 11-CCTGACHCSC (Motif 43)

A T G C T G A C G C A T T A C G C G T A T G A C G A T C T G A C A T G C A G T C
Reverse Opposite:
T C A G T A C G A C T G C T A G A C T G G C A T A T G C C G T A A C T G T A C G
p-value:1e-7
log p-value:-1.737e+01
Information Content per bp:1.551
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif5.71%
Number of Background Sequences with motif986.9
Percentage of Background Sequences with motif2.08%
Average Position of motif in Targets50.0 +/- 27.7bp
Average Position of motif in Background50.5 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CCTGACHCSC
CCAGACAG--
 A T G C T G A C G C A T T A C G C G T A T G A C G A T C T G A C A T G C A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CCTGACHCSC
CCAGACRSVB
 A T G C T G A C G C A T T A C G C G T A T G A C G A T C T G A C A T G C A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Pax2/MA0067.1/Jaspar

Match Rank:3
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CCTGACHCSC
NCGTGACN---
 A C G T A T G C T G A C G C A T T A C G C G T A T G A C G A T C T G A C A T G C A G T C
T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CCTGACHCSC----
NNNNTGACCCGGCGCG
 A C G T A C G T A T G C T G A C G C A T T A C G C G T A T G A C G A T C T G A C A T G C A G T C A C G T A C G T A C G T A C G T
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCTGACHCSC
VGCTGWCAVB-
 A C G T A T G C T G A C G C A T T A C G C G T A T G A C G A T C T G A C A T G C A G T C
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CCTGACHCSC
--TGACCYCT
 A T G C T G A C G C A T T A C G C G T A T G A C G A T C T G A C A T G C A G T C
A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

PB0057.1_Rxra_1/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CCTGACHCSC----
TGTCGTGACCCCTTAAT
 A C G T A C G T A C G T A T G C T G A C G C A T T A C G C G T A T G A C G A T C T G A C A T G C A G T C A C G T A C G T A C G T A C G T
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CCTGACHCSC--
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A T G C T G A C G C A T T A C G C G T A T G A C G A T C T G A C A T G C A G T C A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PB0157.1_Rara_2/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCTGACHCSC----
NNCNTGACCCCGCTCT
 A C G T A C G T A T G C T G A C G C A T T A C G C G T A T G A C G A T C T G A C A T G C A G T C A C G T A C G T A C G T A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CCTGACHCSC
-TTGACAG--
 A T G C T G A C G C A T T A C G C G T A T G A C G A T C T G A C A T G C A G T C
A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T