Information for 13-SAGRRKTKGYYAM (Motif 32)

A T C G C G T A C T A G T C G A C T A G A C T G A C G T A C G T C T A G A G C T G A C T G T C A G T A C
Reverse Opposite:
A C T G A C G T C T G A C T G A A G T C G T C A T G C A G T A C A G T C A G C T A G T C A C G T A T G C
p-value:1e-9
log p-value:-2.243e+01
Information Content per bp:1.753
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.76%
Number of Background Sequences with motif61.7
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets54.8 +/- 31.2bp
Average Position of motif in Background47.9 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0168.1_Hnf1b/Jaspar

Match Rank:1
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:SAGRRKTKGYYAM-----
-ANNNCTAGTTAACNGNN
 A T C G C G T A C T A G T C G A C T A G A C T G A C G T A C G T C T A G A G C T G A C T G T C A G T A C A C G T A C G T A C G T A C G T A C G T
A C G T C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

HMBOX1/MA0895.1/Jaspar

Match Rank:2
Score:0.53
Offset:4
Orientation:forward strand
Alignment:SAGRRKTKGYYAM-
----ACTAGTTAAC
 A T C G C G T A C T A G T C G A C T A G A C T G A C G T A C G T C T A G A G C T G A C T G T C A G T A C A C G T
A C G T A C G T A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:3
Score:0.53
Offset:3
Orientation:forward strand
Alignment:SAGRRKTKGYYAM
---AAGGTGTKAA
 A T C G C G T A C T A G T C G A C T A G A C T G A C G T A C G T C T A G A G C T G A C T G T C A G T A C
A C G T A C G T A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A

PH0040.1_Hmbox1/Jaspar

Match Rank:4
Score:0.52
Offset:0
Orientation:forward strand
Alignment:SAGRRKTKGYYAM----
GAAAACTAGTTAACATC
 A T C G C G T A C T A G T C G A C T A G A C T G A C G T A C G T C T A G A G C T G A C T G T C A G T A C A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--SAGRRKTKGYYAM--------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A T C G C G T A C T A G T C G A C T A G A C T G A C G T A C G T C T A G A G C T G A C T G T C A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:6
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:SAGRRKTKGYYAM----
--NNCGTTGCTATGGNN
 A T C G C G T A C T A G T C G A C T A G A C T G A C G T A C G T C T A G A G C T G A C T G T C A G T A C A C G T A C G T A C G T A C G T
A C G T A C G T G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

ZBTB18/MA0698.1/Jaspar

Match Rank:7
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----SAGRRKTKGYYAM
CATCCAGATGTTC----
 A C G T A C G T A C G T A C G T A T C G C G T A C T A G T C G A C T A G A C T G A C G T A C G T C T A G A G C T G A C T G T C A G T A C
G T A C C G T A A C G T T G A C G T A C C G T A A T C G G T C A A C G T C T A G G A C T C A G T A G T C A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:SAGRRKTKGYYAM
-----CTTGGCAA
 A T C G C G T A C T A G T C G A C T A G A C T G A C G T A C G T C T A G A G C T G A C T G T C A G T A C
A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

PB0117.1_Eomes_2/Jaspar

Match Rank:9
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---SAGRRKTKGYYAM
GCGGAGGTGTCGCCTC
 A C G T A C G T A C G T A T C G C G T A C T A G T C G A C T A G A C T G A C G T A C G T C T A G A G C T G A C T G T C A G T A C
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:10
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:SAGRRKTKGYYAM---
-NNAATTAGTCACGGT
 A T C G C G T A C T A G T C G A C T A G A C T G A C G T A C G T C T A G A G C T G A C T G T C A G T A C A C G T A C G T A C G T
A C G T A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T