Information for 5-GCTATTAAAT (Motif 27)

T A C G A T G C G C A T C T G A C A G T G C A T G T C A C G T A C T G A G A C T
Reverse Opposite:
C T G A G A C T G C A T C A G T C G T A G T C A G A C T C G T A T A C G A T G C
p-value:1e-10
log p-value:-2.366e+01
Information Content per bp:1.652
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif7.03%
Number of Background Sequences with motif1121.5
Percentage of Background Sequences with motif2.37%
Average Position of motif in Targets47.7 +/- 29.4bp
Average Position of motif in Background49.3 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:1
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GCTATTAAAT
NGCAATTAAA-
 A C G T T A C G A T G C G C A T C T G A C A G T G C A T G T C A C G T A C T G A G A C T
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GCTATTAAAT
GCAATAAAAA
 T A C G A T G C G C A T C T G A C A G T G C A T G T C A C G T A C T G A G A C T
T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

Arid3a/MA0151.1/Jaspar

Match Rank:3
Score:0.73
Offset:3
Orientation:forward strand
Alignment:GCTATTAAAT
---ATTAAA-
 T A C G A T G C G C A T C T G A C A G T G C A T G T C A C G T A C T G A G A C T
A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:4
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---GCTATTAAAT----
ACGGCCATAAAATTAAT
 A C G T A C G T A C G T T A C G A T G C G C A T C T G A C A G T G C A T G T C A C G T A C T G A G A C T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

PH0064.1_Hoxb9/Jaspar

Match Rank:5
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GCTATTAAAT---
AGAGCCATAAAATTCG
 A C G T A C G T A C G T T A C G A T G C G C A T C T G A C A G T G C A T G T C A C G T A C T G A G A C T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Hmx1/MA0896.1/Jaspar

Match Rank:6
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCTATTAAAT---
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C G T T A C G A T G C G C A T C T G A C A G T G C A T G T C A C G T A C T G A G A C T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:7
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCTATTAAAT---
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C G T T A C G A T G C G C A T C T G A C A G T G C A T G T C A C G T A C T G A G A C T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:8
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCTATTAAAT
GGTAATAAAAA
 A C G T T A C G A T G C G C A T C T G A C A G T G C A T G T C A C G T A C T G A G A C T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

Hoxd8/MA0910.1/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCTATTAAAT-----
NAGCCATTAATTANTTA
 A C G T A C G T T A C G A T G C G C A T C T G A C A G T G C A T G T C A C G T A C T G A G A C T A C G T A C G T A C G T A C G T A C G T
C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A

PH0080.1_Hoxd8/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCTATTAAAT-----
NAGCCATTAATTANTTA
 A C G T A C G T T A C G A T G C G C A T C T G A C A G T G C A T G T C A C G T A C T G A G A C T A C G T A C G T A C G T A C G T A C G T
C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A